A ribozyme that triphosphorylates RNA 5′-hydroxyl groups

JE Moretti, UF Müller - Nucleic acids research, 2014 - academic.oup.com
The RNA world hypothesis describes a stage in the early evolution of life in which RNA
served as genome and as the only genome-encoded catalyst. To test whether RNA world …

A faster triphosphorylation ribozyme

GF Dolan, A Akoopie, UF Müller - PLoS One, 2015 - journals.plos.org
In support of the RNA world hypothesis, previous studies identified trimetaphosphate (Tmp)
as a plausible energy source for RNA world organisms. In one of these studies, catalytic …

Lower temperature optimum of a smaller, fragmented triphosphorylation ribozyme

A Akoopie, UF Müller - Physical Chemistry Chemical Physics, 2016 - pubs.rsc.org
The RNA world hypothesis describes a stage in the early evolution of life in which catalytic
RNAs mediated the replication of RNA world organisms. One challenge to this hypothesis is …

A ribozyme that uses lanthanides as cofactor

KJ Sweeney, X Han, UF Müller - Nucleic Acids Research, 2023 - academic.oup.com
To explore how an early, RNA-based life form could have functioned, in vitro selection
experiments have been used to develop catalytic RNAs (ribozymes) with relevant functions …

A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme

A Akoopie, JT Arriola, D Magde, UF Müller - Science Advances, 2021 - science.org
Synthesis of RNA in early life forms required chemically activated nucleotides, perhaps in
the same form of nucleoside 5′-triphosphates (NTPs) as in the contemporary biosphere …

[PDF][PDF] A promiscuous ribozyme promotes nucleotide synthesis in addition to ribose chemistry

MWL Lau, PJ Unrau - Chemistry & biology, 2009 - cell.com
Here we report the in vitro selection of an unusual ribozyme that efficiently performs
nucleotide synthesis even though it was selected to perform a distinctly different sugar …

[HTML][HTML] RNA synthesis by in vitro selected ribozymes for recreating an RNA world

LL Martin, PJ Unrau, UF Müller - Life, 2015 - mdpi.com
The RNA world hypothesis states that during an early stage of life, RNA molecules
functioned as genome and as the only genome-encoded catalyst. This hypothesis is …

Nucleobase modification by an RNA enzyme

RR Poudyal, PDM Nguyen… - Nucleic acids …, 2017 - academic.oup.com
Ribozymes can catalyze phosphoryl or nucleotidyl transfer onto ribose hydroxyls of RNA
chains. We report a single ribozyme that performs both reactions, with a nucleobase serving …

Ribozymes and the mechanisms that underlie RNA catalysis

TJ Wilson, Y Liu, DMJ Lilley - Frontiers of Chemical Science and …, 2016 - Springer
Ribozymes are widespread, and catalyze some extremely important reactions in the cell.
Mechanistically most fall into one of two classes, using either metal ions or general acid …

A trans acting ribozyme that phosphorylates exogenous RNA

D Saran, DG Nickens, DH Burke - Biochemistry, 2005 - ACS Publications
The structural complexity required for substrate recognition within an active site constrains
the evolution of novel catalytic functions. To evaluate those constraints within populations of …