Effective rate models for the analysis of transport-dependent biosensor data

T Mason, AR Pineda, C Wofsy, B Goldstein - Mathematical biosciences, 1999 - Elsevier
Optical biosensors, including the BIACORE, provide an increasingly popular method for
determining reaction rates of biomolecules. In a flow chamber, with one reactant …

Extending the range of rate constants available from BIACORE: interpreting mass transport-influenced binding data

DG Myszka, X He, M Dembo, TA Morton, B Goldstein - Biophysical journal, 1998 - cell.com
Surface-based binding assays are often influenced by the transport of analyte to the sensor
surface. Using simulated data sets, we test a simple two-compartment model to see if its …

Transport and kinetic processes underlying biomolecular interactions in the BIACORE optical biosensor

V Sikavitsas, JM Nitsche… - Biotechnology …, 2002 - Wiley Online Library
The transport and kinetic processes describing biomolecular interactions in the BIACORE
optical biosensor have been studied with the help of a mathematical model. In comparison …

The influence of transport on the kinetics of binding to surface receptors: application to cells and BIAcore

B Goldstein, D Coombs, X He… - Journal of molecular …, 1999 - Wiley Online Library
Accurate estimation of biomolecular reaction rates from binding data, when ligands in
solution bind to receptors on the surfaces of cells or biosensors, requires an understanding …

Transport effects on surface–volume biological reactions

DA Edwards, B Goldstein, DS Cohen - Journal of Mathematical Biology, 1999 - Springer
Many cellular reactions involve a reactant in solution binding to or dissociating from a
reactant confined to a surface. This is true as well for a BIAcore TM, an optical biosensor that …

The effect of a receptor layer on the measurement of rate constants

DA Edwards - Bulletin of Mathematical Biology, 2001 - Elsevier
Many cellular reactions involve a reactant in solution binding to or dissociating from a
reactant attached to a surface. Most studies assume that the reactions occur on this surface …

A theoretical and experimental study of competition between solution and surface receptors for ligand in a Biacore flow cell

X He, D Coombs, DG Myszka, B Goldstein - Bulletin of mathematical …, 2006 - Springer
Rate constants that characterize the kinetics of binding and dissociation between
biomolecules carry fundamental information about the biological processes these molecules …

A computational reaction− diffusion model for the analysis of transport-limited kinetics

RA Vijayendran, FS Ligler, DE Leckband - Analytical Chemistry, 1999 - ACS Publications
Optical, evanescent wave biosensors have become popular tools for quantitatively
characterizing the kinetic properties of biomolecular interactions. Analyzing data from …

Refining the measurement of rate constants in the BIAcore

DA Edwards - Journal of mathematical biology, 2004 - Springer
When estimating rate constants using the BIAcore surface plasmon resonance (SPR)
biosensor, one must have an accurate mathematical model to interpret sensogram data …

CLAMP©: a biosensor kinetic data analysis program

DG Myszka, TA Morton - Trends in biochemical sciences, 1998 - cell.com
Figure 1 Global fit of a two-compartment reaction model (Eqn 1, red lines) to binding
responses generated for the same reaction over two different capacity surfaces6. The …