Analysis of codon usage bias of chloroplast genes in Oryza species: Codon usage of chloroplast genes in Oryza species

S Chakraborty, S Yengkhom, A Uddin - Planta, 2020 - Springer
Main conclusion The codon usage bias in chloroplast genes of Oryza species was low and
AT rich. The pattern of codon usage was different among Oryza species and mainly …

Patterns of synonymous codon usage bias in chloroplast genomes of seed plants

M Zhou, W Long, X Li - Forestry Studies in China, 2008 - Springer
Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba,
Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find …

[HTML][HTML] Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

Analysis of synonymous codon usage of chloroplast genome in Porphyra umbilicalis

G Li, Z Pan, S Gao, Y He, Q Xia, Y Jin, H Yao - Genes & genomics, 2019 - Springer
Background Synonymous codon usage bias is noticed in the genome of every organism,
influenced by mutation pressure and natural selection. The analysis of codon usage pattern …

[HTML][HTML] Synonymous codon usage in chloroplast genome of Coffea arabica

RR Nair, MB Nandhini, E Monalisha, K Murugan… - …, 2012 - ncbi.nlm.nih.gov
Synonymous codon usage of 53 protein coding genes in chloroplast genome of Coffea
arabica was analyzed for the first time to find out the possible factors contributing codon …

Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species

Q Liu, Q Xue - Journal of genetics, 2005 - Springer
A detailed comparison was made of codon usage of chloroplast genes with their host
(nuclear) genes in the four angiosperm species Oryza sativa, Zea mays, Triticum aestivum …

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

Y Zhang, X Nie, X Jia, C Zhao, SS Biradar… - Australian Journal of …, 2012 - CSIRO Publishing
Codon usage patterns of 23 Poaceae chloroplast genomes were analysed in this study.
Neutrality analysis indicated that the codon usage patterns have significant correlations with …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …

Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)

C Li, L Zhou, J Nie, S Wu, W Li, Y Liu, Y Liu - Physiology and Molecular …, 2023 - Springer
Codon usage bias (CUB) reveals the characteristics of species and can be utilized to
understand their evolutionary relationship, increase the target genes' expression in the …

Analysis of synonymous codon usage in chloroplast genome of Populus alba

M Zhou, W Long, X Li - Journal of Forestry Research, 2008 - Springer
The pattern of codon usage in the chloroplast genome of Populus alba was investigated.
Correspondence analysis (a commonly used multivariate statistical approach) and method …