Codon usage bias: causative factors, quantification methods and genome‐wide patterns: with emphasis on insect genomes
SK Behura, DW Severson - Biological Reviews, 2013 - Wiley Online Library
Codon usage bias refers to the phenomenon where specific codons are used more often
than other synonymous codons during translation of genes, the extent of which varies within …
than other synonymous codons during translation of genes, the extent of which varies within …
[HTML][HTML] Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes
SK Behura, DW Severson - 2012 - journals.plos.org
Background Codon bias is a phenomenon of non-uniform usage of codons whereas codon
context generally refers to sequential pair of codons in a gene. Although genome …
context generally refers to sequential pair of codons in a gene. Although genome …
Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion
Selection on codon usage bias is well documented in a number of microorganisms. Whether
codon usage is also generally shaped by natural selection in large organisms, despite their …
codon usage is also generally shaped by natural selection in large organisms, despite their …
[HTML][HTML] Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles
M Botzman, H Margalit - Genome biology, 2011 - Springer
Background It is widely acknowledged that synonymous codons are used unevenly among
genes in a genome. In organisms under translational selection, genes encoding highly …
genes in a genome. In organisms under translational selection, genes encoding highly …
[HTML][HTML] Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution
L Wei, J He, X Jia, Q Qi, Z Liang, H Zheng, Y Ping… - BMC evolutionary …, 2014 - Springer
Background Synonymous codon usage bias (SCUB) is an inevitable phenomenon in
organismic taxa, generally referring to differences in the occurrence frequency of codons …
organismic taxa, generally referring to differences in the occurrence frequency of codons …
[HTML][HTML] Codon usage bias
ST Parvathy, V Udayasuriyan, V Bhadana - Molecular biology reports, 2022 - Springer
Codon usage bias is the preferential or non-random use of synonymous codons, a
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …
CodonO: codon usage bias analysis within and across genomes
MC Angellotti, SB Bhuiyan, G Chen… - Nucleic acids …, 2007 - academic.oup.com
Synonymous codon usage biases are associated with various biological factors, such as
gene expression level, gene length, gene translation initiation signal, protein amino acid …
gene expression level, gene length, gene translation initiation signal, protein amino acid …
Selection on codon bias
R Hershberg, DA Petrov - Annual review of genetics, 2008 - annualreviews.org
In a wide variety of organisms, synonymous codons are used with different frequencies, a
phenomenon known as codon bias. Population genetic studies have shown that …
phenomenon known as codon bias. Population genetic studies have shown that …
Accounting for background nucleotide composition when measuring codon usage bias
JA Novembre - Molecular biology and evolution, 2002 - academic.oup.com
The phenomenon of codon usage bias has been important in the study of evolution because
it provides examples of weak selection working at the molecular level. During the last two …
it provides examples of weak selection working at the molecular level. During the last two …
Codon usage bias: an endless tale
Since the genetic code is degenerate, several codons are translated to the same amino
acid. Although these triplets were historically considered to be “synonymous” and therefore …
acid. Although these triplets were historically considered to be “synonymous” and therefore …