Genetic variance partitioning and genome-wide prediction with allele dosage information in autotetraploid potato

JB Endelman, CAS Carley, PC Bethke, JJ Coombs… - Genetics, 2018 - academic.oup.com
As one of the world's most important food crops, the potato (Solanum tuberosum L.) has
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …

The value of expanding the training population to improve genomic selection models in tetraploid potato

E Sverrisdóttir, EHR Sundmark, HØ Johnsen… - Frontiers in plant …, 2018 - frontiersin.org
Genomic selection (GS) is becoming increasingly applicable to crops as the genotyping
costs continue to decrease, which makes it an attractive alternative to traditional selective …

Improving genetic gain with genomic selection in autotetraploid potato

AT Slater, NOI Cogan, JW Forster, BJ Hayes… - The plant …, 2016 - Wiley Online Library
Potato (Solanum tuberosum L.) breeders consider a large number of traits during cultivar
development and progress in conventional breeding can be slow. There is accumulating …

Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops

DC Gemenet, H Lindqvist-Kreuze, B De Boeck… - Theoretical and Applied …, 2020 - Springer
Key message Polypoid crop breeders can balance resources between density and
sequencing depth, dosage information and fewer highly informative SNPs recommended …

Improving the analysis of low heritability complex traits for enhanced genetic gain in potato

AT Slater, GM Wilson, NOI Cogan, JW Forster… - Theoretical and applied …, 2014 - Springer
Key message Best linear unbiased prediction (BLUP), which uses pedigree to estimate
breeding values, can result in increased genetic gains for low heritability traits in …

Genomic prediction with allele dosage information in highly polyploid species

LG Batista, VH Mello, AP Souza… - Theoretical and Applied …, 2022 - Springer
Key message Including allele, dosage can improve genomic selection in highly polyploid
species under higher frequency of different heterozygous genotypic classes and high …

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing

E Sverrisdóttir, S Byrne, EHR Sundmark… - Theoretical and Applied …, 2017 - Springer
Key message Genomic prediction models for starch content and chipping quality show
promising results, suggesting that genomic selection is a feasible breeding strategy in …

Prospects and potential uses of genomic prediction of key performance traits in tetraploid potato

B Stich, D Van Inghelandt - Frontiers in plant science, 2018 - frontiersin.org
Genomic prediction is a routine tool in breeding programs of most major animal and plant
species. However, its usefulness for potato breeding has not yet been evaluated in detail …

Genomic selection and genome‐wide association studies in tetraploid chipping potatoes

J Pandey, DC Scheuring, JW Koym… - The Plant …, 2023 - Wiley Online Library
Potato is a major food crop in the United States and around the world. Most potatoes grown
in the United States are destined for processing. Genomic selection can speed up breeding …

Understanding the effectiveness of genomic prediction in tetraploid potato

S Wilson, C Zheng, C Maliepaard, HA Mulder… - Frontiers in Plant …, 2021 - frontiersin.org
Use of genomic prediction (GP) in tetraploid is becoming more common. Therefore, we think
it is the right time for a comparison of GP models for tetraploid potato. GP models were …