Viruses as winners in the game of life

AG Cobián Güemes, M Youle, VA Cantú… - Annual review of …, 2016 - annualreviews.org
Viruses are the most abundant and the most diverse life form. In this meta-analysis we
estimate that there are 4.80× 1031 phages on Earth. Further, 97% of viruses are in soil and …

Exploring the viral world through metagenomics

K Rosario, M Breitbart - Current opinion in virology, 2011 - Elsevier
Viral metagenomics, or shotgun sequencing of purified viral particles, has revolutionized the
field of environmental virology by allowing the exploration of viral communities in a variety of …

[HTML][HTML] Metagenomics in virology

S Roux, J Matthijnssens, BE Dutilh - Encyclopedia of Virology, 2021 - ncbi.nlm.nih.gov
Metagenomics, ie, the sequencing and analysis of genomic information extracted directly
from clinical or environmental samples, has become a fundamental tool to explore the viral …

Integrating viral metagenomics into an ecological framework

P Sommers, A Chatterjee, A Varsani… - Annual review of …, 2021 - annualreviews.org
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

AP Camargo, S Nayfach, IMA Chen… - Nucleic acids …, 2023 - academic.oup.com
Viruses are widely recognized as critical members of all microbiomes. Metagenomics
enables large-scale exploration of the global virosphere, progressively revealing the …

Perspective on taxonomic classification of uncultivated viruses

BE Dutilh, A Varsani, Y Tong, P Simmonds… - Current opinion in …, 2021 - Elsevier
Historically, virus taxonomy has been limited to describing viruses that were readily
cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single …

Viral metagenomics

RA Edwards, F Rohwer - Nature Reviews Microbiology, 2005 - nature.com
Viruses, most of which infect microorganisms, are the most abundant biological entities on
the planet. Identifying and measuring the community dynamics of viruses in the environment …

Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

A comprehensive and quantitative exploration of thousands of viral genomes

G Mahmoudabadi, R Phillips - elife, 2018 - elifesciences.org
The complete assembly of viral genomes from metagenomic datasets (short genomic
sequences gathered from environmental samples) has proven to be challenging, so there …

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences

S Roux, M Krupovic, D Debroas, P Forterre… - Open …, 2013 - royalsocietypublishing.org
Although the importance of viruses in natural ecosystems is widely acknowledged, the
functional potential of viral communities is yet to be determined. Viral genomes are …