Although codon usage is often represented by a 61-dimensional vector, the ability of
determining the codon bias in a gene relies on a uni-dimensional vector which measures …

We present an expression measure of a gene, devised to predict the level of gene
expression from relative codon bias (RCB). There are a number of measures currently in use …

In protein-coding genes, the genetic code defines the translational mapping from nucleotide
triplets (or codons) to amino acids. Synonymous codons translate to the same amino acid …

Escherichia coli has long been regarded as a model organism in the study of codon usage
bias (CUB). However, most studies in this organism regarding this topic have been …

Codon usage bias reveals the silent molecular evolution pattern. Previous research showed
the codon usage bias was associated with many biological processes, such as protein …

Most of the current codon usage bias computational approaches are only suitable for the
comparison of codon usage bias within a single genome. Here we introduce a new …

Multivariate analyses are often used to identify major trends of variation in synonymous
codon usage among genes. These analyses need to be performed on properly normalized …

Background There are a number of methods (also called: measures) currently in use that
quantify codon usage in genes. These measures are often influenced by other sequence …

Synonymous codon usage biases are associated with various biological factors, such as
gene expression level, gene length, gene translation initiation signal, protein amino acid …

Different organisms use synonymous codons with different preferences. Several measures
have been introduced to compute the extent of codon usage bias within a gene or genome …