[HTML][HTML] shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R

JP Fortin, E Fertig, K Hansen - F1000Research, 2014 - ncbi.nlm.nih.gov
shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …

shinyÉPICo: a graphical pipeline to analyze Illumina DNA methylation arrays

O Morante-Palacios, E Ballestar - Bioinformatics, 2021 - academic.oup.com
interactive and graphical tools for DNA methylation array analysis. For example, shinyMethyl
can be used to visualize quality control … in PDF format, the R objects of the analysis and a …

[PDF][PDF] shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R [v2; ref status: indexed

JP Fortin, E Fertig, K Hansen - 2014 - scienceopen.com
shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays. … 450k experiments into small exportable R objects from which an …

DNA Methylation: Methods and Analyses

TJ Gorrie-Stone - 2019 - repository.essex.ac.uk
… of quality control, the first using the shinyMethyl R package … MethylAid and shinyMethyl both
offer interactive GUIs for the … of the BeadStudio software of Illumina) and wateRmelon (the …

[PDF][PDF] shinyMethyl: interactive visualization of Illumina 450K methylation arrays

JP Fortin, KD Hansen - 2015 - mirror.iscas.ac.cn
… The goal of shinyMethyl is two-fold: (1) summarize a high… 450K array experiment into an
exportable small-sized R object and (2) launch an interactive visualization tool for quality control

methylR: a graphical interface for comprehensive DNA methylation array data analysis

M Volpe, J Das - Bioinformatics, 2023 - academic.oup.com
… is designed for Illumina DNA methylation array data analysis, … through Bioconductor that
perform quality control, variance … 2015) R packages to provide clear and interactive graphical …

[PDF][PDF] methylation arrays in R [version 1; peer review: 2 approved]

JP Fortin, E Fertig, K Hansen - 2014 - pdfs.semanticscholar.org
shinyMethyl, a Bioconductor package for interactive quality control of DNA methylation data
from Illumina 450k arrays… , shinyMethyl offers three interactive plots for quality control. These …

[PDF][PDF] MethylAid: Visual and Interactive qual-ity control of Illumina Human DNA Methylation array data

M van Iterson, D Cats, B Heijmans - 2019 - s3.jcloud.sjtu.edu.cn
shinyMethyl allows quality control assessment and interactive exploration of 450k array data
in … After summarization the data can be loaded into R and passed to visualize for interactive

[PDF][PDF] Statistical methods for epigenetic data and structural magnetic resonance imaging

JP Fortin - 2016 - jscholarship.library.jhu.edu
… Finally, we present shinyMethyl, a Bioconductor package for interactive quality control of
DNA methylation data from the Illumina 450k array. … in all datasets passed our quality control. …

[HTML][HTML] Identifying mislabeled and contaminated DNA methylation microarray data: an extended quality control toolset with examples from GEO

JA Heiss, AC Just - Clinical epigenetics, 2018 - Springer
… We describe a set of quality checks for the popular Illumina 450K and EPIC microarrays to
… probes visually are provided in the minfi [9], RnBeads [10] and shinyMethyl [11] R packages. …