Comparative analysis of codon bias in the chloroplast genomes of theaceae species
Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
… , we systematically analysed the codon usage (CU) characteristics of the chloroplast
genomes of Theaceae species, the source of variation, the high-frequency (HF) codons, and the …
genomes of Theaceae species, the source of variation, the high-frequency (HF) codons, and the …
The specific DNA barcodes based on chloroplast genes for species identification of Theaceae plants
S Jiang, F Chen, P Qin, H Xie, G Peng, Y Li… - … and Molecular Biology of …, 2022 - Springer
… This study aimed to construct DNA barcodes of Theaceae species and test the identification
accuracy of barcodes. Some sequences on online databases are incomplete and have …
accuracy of barcodes. Some sequences on online databases are incomplete and have …
Decoding the complete organelle genomic architecture of Stewartia gemmata: an early-diverging species in Theaceae
… gemmata, which is consistent with codon usage bias within the mitochondrial genomes of
the other four species in Theaceae [30]. Similar findings were also reported in previous studies …
the other four species in Theaceae [30]. Similar findings were also reported in previous studies …
Comparative analysis of codon usage bias in chloroplast genomes of ten medicinal species of Rutaceae
L Shen, S Chen, M Liang, S Qu, S Feng, D Wang… - BMC Plant …, 2024 - Springer
… Our results are consistent with the previous results obtained in Euphor biaceae [29],
Theaceae plant family [31], and Oryza [57]. In addition, we observed that two to three genes had …
Theaceae plant family [31], and Oryza [57]. In addition, we observed that two to three genes had …
Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae)
Q Hu, J Wu, C Fan, Y Luo, J Liu, Z Deng, Q Li - BMC Genomic Data, 2024 - Springer
… The base composition and codon usage preferences of the eighteen chloroplast … of their
codons being less than 50%. This indicates that they preferred A/T bases. Their effective codon …
codons being less than 50%. This indicates that they preferred A/T bases. Their effective codon …
Analysis of chloroplast genome characteristics and codon usage bias in 14 species of Annonaceae
X Hu, Y Li, F Meng, Y Duan, M Sun, S Yang… - Functional & Integrative …, 2024 - Springer
… Codon usage bias (CUB) analysis is a tool that is utilized to improve gene expression and …
, codon usage patterns and the sources of variation on CUB in 14 Annonaceae species using …
, codon usage patterns and the sources of variation on CUB in 14 Annonaceae species using …
Phylogenomics resolves the phylogeny of Theaceae by using low-copy and multi-copy nuclear gene makers and uncovers a fast radiation event contributing to tea …
L Cheng, M Li, Q Han, Z Qiao, Y Hao, TS Balbuena… - Biology, 2022 - mdpi.com
… representative species of Theaceae, as well as additional plastome sequence data, were
generated [19,25]. In this study, genomes and transcriptomes of 91 Theaceae species were …
generated [19,25]. In this study, genomes and transcriptomes of 91 Theaceae species were …
Repetitive Sequences, Codon Usage Bias and Phylogenetic Analysis of the Plastome of Miliusa glochidioides
Y Gan, J Ping, X Liu, C Peng - Biochemical Genetics, 2024 - Springer
… Currently, there is limited research on the repetitive sequences and codon usage bias of …
analyzed the repetitive sequences and codon usage bias of the previously obtained plastome …
analyzed the repetitive sequences and codon usage bias of the previously obtained plastome …
The chloroplast genome of Camellia sinensis var. assamica cv. Duntsa (Theaceae) and comparative genome analysis: mutational hotspots and phylogenetic …
J Li, XY Qiu, Y Qin, H Tang, J Tang, TT Liu… - Genetic Resources and …, 2024 - Springer
… species to their environment and is influenced by a variety of factors. The RSCU values of a
species reflect the codon usage … codon usage. It has been suggested that plant synonymous …
species reflect the codon usage … codon usage. It has been suggested that plant synonymous …
[HTML][HTML] Analysis of Codon Usage Bias in Chloroplast Genomes of Dryas octopetala var. asiatica (Rosaceae)
L Ling, S Zhang, T Yang - Genes, 2024 - ncbi.nlm.nih.gov
… Codon preferences in multiple plant chloroplast genomes, … codon usage bias of the genes
within the chloroplast genome, clarifying the main factors influencing this bias in this species. …
within the chloroplast genome, clarifying the main factors influencing this bias in this species. …
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