Coming of age: ten years of next-generation sequencing technologies
Since the completion of the human genome project in 2003, extraordinary progress has
been made in genome sequencing technologies, which has led to a decreased cost per …
been made in genome sequencing technologies, which has led to a decreased cost per …
[HTML][HTML] DNA methylation analysis: choosing the right method
S Kurdyukov, M Bullock - Biology, 2016 - mdpi.com
In the burgeoning field of epigenetics, there are several methods available to determine the
methylation status of DNA samples. However, choosing the method that is best suited to …
methylation status of DNA samples. However, choosing the method that is best suited to …
Repetitive DNA and next-generation sequencing: computational challenges and solutions
TJ Treangen, SL Salzberg - Nature Reviews Genetics, 2012 - nature.com
Repetitive DNA sequences are abundant in a broad range of species, from bacteria to
mammals, and they cover nearly half of the human genome. Repeats have always …
mammals, and they cover nearly half of the human genome. Repeats have always …
The Polycomb complex PRC2 and its mark in life
R Margueron, D Reinberg - Nature, 2011 - nature.com
Polycomb group proteins maintain the gene-expression pattern of different cells that is set
during early development by regulating chromatin structure. In mammals, two main …
during early development by regulating chromatin structure. In mammals, two main …
Human DNA methylomes at base resolution show widespread epigenomic differences
DNA cytosine methylation is a central epigenetic modification that has essential roles in
cellular processes including genome regulation, development and disease. Here we …
cellular processes including genome regulation, development and disease. Here we …
Principles and challenges of genome-wide DNA methylation analysis
PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …
eukaryotes that has important implications for normal biology and disease. Therefore …
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
Genome-wide mapping of 5-methylcytosine is of broad interest to many fields of biology and
medicine. A variety of methods have been developed, and several have recently been …
medicine. A variety of methods have been developed, and several have recently been …
[HTML][HTML] Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity
Emerging single-cell epigenomic methods are being developed with the exciting potential to
transform our knowledge of gene regulation. Here we review available techniques and …
transform our knowledge of gene regulation. Here we review available techniques and …
[HTML][HTML] Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
Human embryonic stem cells (hESCs) share an identical genome with lineage-committed
cells, yet possess the remarkable properties of self-renewal and pluripotency. The diverse …
cells, yet possess the remarkable properties of self-renewal and pluripotency. The diverse …
[HTML][HTML] Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
H Kobayashi, T Sakurai, M Imai, N Takahashi… - PLoS …, 2012 - journals.plos.org
Genome-wide dynamic changes in DNA methylation are indispensable for germline
development and genomic imprinting in mammals. Here, we report single-base resolution …
development and genomic imprinting in mammals. Here, we report single-base resolution …