Characterizing cis-regulatory elements using single-cell epigenomics

S Preissl, KJ Gaulton, B Ren - Nature Reviews Genetics, 2023 - nature.com
Cell type-specific gene expression patterns and dynamics during development or in disease
are controlled by cis-regulatory elements (CREs), such as promoters and enhancers …

Epigenetic regulation of T cell exhaustion

JA Belk, B Daniel, AT Satpathy - Nature immunology, 2022 - nature.com
Chronic antigen stimulation during viral infections and cancer can lead to T cell exhaustion,
which is characterized by reduced effector function and proliferation, and the expression of …

Reprogramming to recover youthful epigenetic information and restore vision

Y Lu, B Brommer, X Tian, A Krishnan, M Meer, C Wang… - Nature, 2020 - nature.com
Ageing is a degenerative process that leads to tissue dysfunction and death. A proposed
cause of ageing is the accumulation of epigenetic noise that disrupts gene expression …

The language of chromatin modification in human cancers

S Zhao, CD Allis, GG Wang - Nature Reviews Cancer, 2021 - nature.com
The genetic information of human cells is stored in the context of chromatin, which is
subjected to DNA methylation and various histone modifications. Such a 'language'of …

RNA m6A regulates transcription via DNA demethylation and chromatin accessibility

S Deng, J Zhang, J Su, Z Zuo, L Zeng, K Liu, Y Zheng… - Nature Genetics, 2022 - nature.com
Transcriptional regulation, which integrates chromatin accessibility, transcription factors and
epigenetic modifications, is crucial for establishing and maintaining cell identity. The …

[HTML][HTML] Epigenetic modulation of antitumor immunity for improved cancer immunotherapy

E Dai, Z Zhu, S Wahed, Z Qu, WJ Storkus, ZS Guo - Molecular cancer, 2021 - Springer
Epigenetic mechanisms play vital roles not only in cancer initiation and progression, but also
in the activation, differentiation and effector function (s) of immune cells. In this review, we …

Relationships among smoking, oxidative stress, inflammation, macromolecular damage, and cancer

AW Caliri, S Tommasi, A Besaratinia - Mutation Research/Reviews in …, 2021 - Elsevier
Smoking is a major risk factor for a variety of diseases, including cancer and immune-
mediated inflammatory diseases. Tobacco smoke contains a mixture of chemicals, including …

[HTML][HTML] DNA methylation aging clocks: challenges and recommendations

CG Bell, R Lowe, PD Adams, AA Baccarelli, S Beck… - Genome biology, 2019 - Springer
Epigenetic clocks comprise a set of CpG sites whose DNA methylation levels measure
subject age. These clocks are acknowledged as a highly accurate molecular correlate of …

[HTML][HTML] Identifying the wide diversity of extraterrestrial purine and pyrimidine nucleobases in carbonaceous meteorites

Y Oba, Y Takano, Y Furukawa, T Koga… - Nature …, 2022 - nature.com
The lack of pyrimidine diversity in meteorites remains a mystery since prebiotic chemical
models and laboratory experiments have predicted that these compounds can also be …

[HTML][HTML] LncRNA-mediated DNA methylation: an emerging mechanism in cancer and beyond

W Huang, H Li, Q Yu, W Xiao, DO Wang - Journal of Experimental & …, 2022 - Springer
DNA methylation is one of the most important epigenetic mechanisms to regulate gene
expression, which is highly dynamic during development and specifically maintained in …