Transition states and cell fate decisions in epigenetic landscapes

N Moris, C Pina, AM Arias - Nature Reviews Genetics, 2016 - nature.com
Waddington's epigenetic landscape is an abstract metaphor frequently used to represent the
relationship between gene activity and cell fates during development. Over the past few …

Lineage specification in the mouse preimplantation embryo

C Chazaud, Y Yamanaka - Development, 2016 - journals.biologists.com
During mouse preimplantation embryo development, totipotent blastomeres generate the
first three cell lineages of the embryo: trophectoderm, epiblast and primitive endoderm. In …

[HTML][HTML] A comprehensive roadmap of murine spermatogenesis defined by single-cell RNA-seq

CD Green, Q Ma, GL Manske, AN Shami, X Zheng… - Developmental cell, 2018 - cell.com
Spermatogenesis requires intricate interactions between the germline and somatic cells.
Within a given cross section of a seminiferous tubule, multiple germ and somatic cell types …

[HTML][HTML] De novo prediction of stem cell identity using single-cell transcriptome data

D Grün, MJ Muraro, JC Boisset, K Wiebrands… - Cell stem cell, 2016 - cell.com
Adult mitotic tissues like the intestine, skin, and blood undergo constant turnover throughout
the life of an organism. Knowing the identity of the stem cell is crucial to understanding …

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq

P Blakeley, NME Fogarty, I Del Valle… - …, 2015 - journals.biologists.com
Here, we provide fundamental insights into early human development by single-cell RNA-
sequencing of human and mouse preimplantation embryos. We elucidate conserved …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Comparative analysis of human and mouse development: From zygote to pre-gastrulation

MA Molè, A Weberling, M Zernicka-Goetz - Current Topics in …, 2020 - Elsevier
Abstract Development of the mammalian embryo begins with formation of the totipotent
zygote during fertilization. This initial cell is able to give rise to every embryonic tissue of the …

[HTML][HTML] Tracing the expression of circular RNAs in human pre-implantation embryos

Y Dang, L Yan, B Hu, X Fan, Y Ren, R Li, Y Lian, J Yan… - Genome biology, 2016 - Springer
Abstract Background PolyA–RNAs have not been widely analyzed in human pre-
implantation embryos due to the scarcity of materials. In particular, circular RNA (circRNA), a …

[HTML][HTML] Systems biology approaches integrated with artificial intelligence for optimized metabolic engineering

M Helmy, D Smith, K Selvarajoo - Metabolic engineering communications, 2020 - Elsevier
Metabolic engineering aims to maximize the production of bio-economically important
substances (compounds, enzymes, or other proteins) through the optimization of the …

[HTML][HTML] NANOG initiates epiblast fate through the coordination of pluripotency genes expression

N Allègre, S Chauveau, C Dennis, Y Renaud… - Nature …, 2022 - nature.com
The epiblast is the source of all mammalian embryonic tissues and of pluripotent embryonic
stem cells. It differentiates alongside the primitive endoderm in a “salt and pepper” pattern …