TET-mediated active DNA demethylation: mechanism, function and beyond

X Wu, Y Zhang - Nature Reviews Genetics, 2017 - nature.com
In mammals, DNA methylation in the form of 5-methylcytosine (5mC) can be actively
reversed to unmodified cytosine (C) through TET dioxygenase-mediated oxidation of 5mC to …

The DNA methylation landscape in cancer

K Skvortsova, C Stirzaker, P Taberlay - Essays in biochemistry, 2019 - portlandpress.com
As one of the most abundant and well-studied epigenetic modifications, DNA methylation
plays an essential role in normal development and cellular biology. Global alterations to the …

[HTML][HTML] DMRT1 regulates human germline commitment

N Irie, SM Lee, V Lorenzi, H Xu, J Chen, M Inoue… - Nature Cell …, 2023 - nature.com
Germline commitment following primordial germ cell (PGC) specification during early human
development establishes an epigenetic programme and competence for gametogenesis …

[HTML][HTML] Reversing DNA methylation: mechanisms, genomics, and biological functions

H Wu, Y Zhang - Cell, 2014 - cell.com
Methylation of cytosines in the mammalian genome represents a key epigenetic modification
and is dynamically regulated during development. Compelling evidence now suggests that …

DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription

WA Pastor, L Aravind, A Rao - Nature reviews Molecular cell biology, 2013 - nature.com
In many organisms, the methylation of cytosine in DNA has a key role in silencing'parasitic'
DNA elements, regulating transcription and establishing cellular identity. The recent …

5-Hydroxymethylcytosine is a predominantly stable DNA modification

M Bachman, S Uribe-Lewis, X Yang, M Williams… - Nature …, 2014 - nature.com
Hydroxymethylcytosine (hmC) is an oxidation product of 5-methylcytosine which is present
in the deoxyribonucleic acid (DNA) of most mammalian cells. Reduction of hmC levels in …

CpG islands and the regulation of transcription

AM Deaton, A Bird - Genes & development, 2011 - genesdev.cshlp.org
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

YF He, BZ Li, Z Li, P Liu, Y Wang, Q Tang, J Ding, Y Jia… - Science, 2011 - science.org
The prevalent DNA modification in higher organisms is the methylation of cytosine to 5-
methylcytosine (5mC), which is partially converted to 5-hydroxymethylcytosine (5hmC) by …

[HTML][HTML] Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome

M Yu, GC Hon, KE Szulwach, CX Song, L Zhang, A Kim… - Cell, 2012 - cell.com
Summary The study of 5-hydroxylmethylcytosines (5hmC) has been hampered by the lack of
a method to map it at single-base resolution on a genome-wide scale. Affinity purification …