Epigenetics and the environment: emerging patterns and implications

R Feil, MF Fraga - Nature reviews genetics, 2012 - nature.com
Epigenetic phenomena in animals and plants are mediated by DNA methylation and stable
chromatin modifications. There has been considerable interest in whether environmental …

Epigenome-wide association studies for common human diseases

VK Rakyan, TA Down, DJ Balding, S Beck - Nature Reviews Genetics, 2011 - nature.com
Despite the success of genome-wide association studies (GWASs) in identifying loci
associated with common diseases, a substantial proportion of the causality remains …

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

W Xie, CL Barr, A Kim, F Yue, AY Lee, J Eubanks… - Cell, 2012 - cell.com
Differential methylation of the two parental genomes in placental mammals is essential for
genomic imprinting and embryogenesis. To systematically study this epigenetic process, we …

Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease

CL Relton, G Davey Smith - International journal of …, 2012 - academic.oup.com
The burgeoning interest in the field of epigenetics has precipitated the need to develop
approaches to strengthen causal inference when considering the role of epigenetic …

The effects of chromatin organization on variation in mutation rates in the genome

KD Makova, RC Hardison - Nature Reviews Genetics, 2015 - nature.com
The variation in local rates of mutations can affect both the evolution of genes and their
function in normal and cancer cells. Deciphering the molecular determinants of this variation …

Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood

G Toperoff, D Aran, JD Kark… - Human molecular …, 2012 - academic.oup.com
Inter-individual DNA methylation variations were frequently hypothesized to alter individual
susceptibility to Type 2 Diabetes Mellitus (T2DM). Sequence-influenced methylations were …

Genetic–epigenetic interactions in cis: a major focus in the post-GWAS era

C Do, A Shearer, M Suzuki, MB Terry, J Gelernter… - Genome biology, 2017 - Springer
Studies on genetic–epigenetic interactions, including the mapping of methylation
quantitative trait loci (mQTLs) and haplotype-dependent allele-specific DNA methylation …

Long-range epigenetic regulation is conferred by genetic variation located at thousands of independent loci

M Lemire, SHE Zaidi, M Ban, B Ge, D Aïssi… - Nature …, 2015 - nature.com
The interplay between genetic and epigenetic variation is only partially understood. One
form of epigenetic variation is methylation at CpG sites, which can be measured as …

Mechanisms and disease associations of haplotype-dependent allele-specific DNA methylation

C Do, CF Lang, J Lin, H Darbary, I Krupska… - The American Journal of …, 2016 - cell.com
Haplotype-dependent allele-specific methylation (hap-ASM) can impact disease
susceptibility, but maps of this phenomenon using stringent criteria in disease-relevant …

SNPs located at CpG sites modulate genome-epigenome interaction

D Zhi, S Aslibekyan, MR Irvin, SA Claas, IB Borecki… - Epigenetics, 2013 - Taylor & Francis
DNA methylation is an important molecular-level phenotype that links genotypes and
complex disease traits. Previous studies have found local correlation between genetic …