Recent progress in non-native nucleic acid modifications

LK McKenzie, R El-Khoury, JD Thorpe… - Chemical Society …, 2021 - pubs.rsc.org
While Nature harnesses RNA and DNA to store, read and write genetic information, the
inherent programmability, synthetic accessibility and wide functionality of these nucleic acids …

Structure and function of long noncoding RNAs in epigenetic regulation

TR Mercer, JS Mattick - Nature structural & molecular biology, 2013 - nature.com
Genomes of complex organisms encode an abundance and diversity of long noncoding
RNAs (lncRNAs) that are expressed throughout the cell and fulfill a wide variety of regulatory …

Gene regulation by antisense transcription

V Pelechano, LM Steinmetz - Nature Reviews Genetics, 2013 - nature.com
Antisense transcription, which was initially considered by many as transcriptional noise, is
increasingly being recognized as an important regulator of gene expression. It is …

Human long noncoding RNA interactome: detection, characterization and function

M Kazimierczyk, MK Kasprowicz, ME Kasprzyk… - International journal of …, 2020 - mdpi.com
The application of a new generation of sequencing techniques has revealed that most of the
genome has already been transcribed. However, only a small part of the genome codes …

Transcriptional regulatory functions of nuclear long noncoding RNAs

KW Vance, CP Ponting - Trends in Genetics, 2014 - cell.com
Several nuclear localised intergenic long noncoding RNAs (lncRNAs) have been ascribed
regulatory roles in transcriptional control and their number is growing rapidly. Initially, these …

The new RNA world: growing evidence for long noncoding RNA functionality

A Jandura, HM Krause - Trends in Genetics, 2017 - cell.com
The past decade has seen a major increase in the study of noncoding RNAs (ncRNAs).
However, there remains a great deal of confusion and debate over the levels of functionality …

Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks

LM Holdt, S Hoffmann, K Sass, D Langenberger… - PLoS …, 2013 - journals.plos.org
The chromosome 9p21 (Chr9p21) locus of coronary artery disease has been identified in
the first surge of genome-wide association and is the strongest genetic factor of …

[PDF][PDF] RNA-DNA triplex formation by long noncoding RNAs

Y Li, J Syed, H Sugiyama - Cell chemical biology, 2016 - cell.com
Long noncoding RNAs (lncRNAs) play a pivotal role in the regulation of biological
processes through various mechanisms that are not fully understood. Proposed …

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome

D Colak, N Zaninovic, MS Cohen, Z Rosenwaks… - Science, 2014 - science.org
Epigenetic gene silencing is seen in several repeat-expansion diseases. In fragile X
syndrome, the most common genetic form of mental retardation, a CGG trinucleotide–repeat …

Rock, scissors, paper: How RNA structure informs function

SM Assmann, HL Chou, PC Bevilacqua - The Plant Cell, 2023 - academic.oup.com
RNA can fold back on itself to adopt a wide range of structures. These range from relatively
simple hairpins to intricate 3D folds and can be accompanied by regulatory interactions with …