Mechanisms of early placental development in mouse and humans

M Hemberger, CW Hanna, W Dean - Nature Reviews Genetics, 2020 - nature.com
The importance of the placenta in supporting mammalian development has long been
recognized, but our knowledge of the molecular, genetic and epigenetic requirements that …

Experiments in stochastic thermodynamics: Short history and perspectives

S Ciliberto - Physical Review X, 2017 - APS
We summarize in this article the experiments which have been performed to test the
theoretical findings in stochastic thermodynamics such as fluctuation theorem, Jarzynski …

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells

K Blaschke, KT Ebata, MM Karimi, JA Zepeda-Martínez… - Nature, 2013 - nature.com
DNA methylation is a heritable epigenetic modification involved in gene silencing,
imprinting, and the suppression of retrotransposons. Global DNA demethylation occurs in …

[PDF][PDF] Molecular co-occupancy identifies transcription factor binding cooperativity in vivo

C Sönmezer, R Kleinendorst, D Imanci, G Barzaghi… - Molecular cell, 2021 - cell.com
Gene activation requires the cooperative activity of multiple transcription factors at cis-
regulatory elements (CREs). Yet, most transcription factors have short residence time …

[PDF][PDF] 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation

GC Hon, CX Song, T Du, F Jin, S Selvaraj, AY Lee… - Molecular cell, 2014 - cell.com
In mammals, cytosine methylation (5mC) is widely distributed throughout the genome but is
notably depleted from active promoters and enhancers. While the role of DNA methylation in …

[PDF][PDF] Loss of Tet enzymes compromises proper differentiation of embryonic stem cells

MM Dawlaty, A Breiling, T Le, MI Barrasa, G Raddatz… - Developmental cell, 2014 - cell.com
Summary Tet enzymes (Tet1/2/3) convert 5-methylcytosine (5mC) to 5-
hydroxymethylcytosine (5hmC) and are dynamically expressed during development …

Dynamics and context-dependent roles of DNA methylation

C Ambrosi, M Manzo, T Baubec - Journal of molecular biology, 2017 - Elsevier
DNA methylation is one of the most extensively studied epigenetic marks. It is involved in
transcriptional gene silencing and plays important roles during mammalian development. Its …

DNA methylation and the preservation of cell identity

O Bogdanović, R Lister - Current opinion in genetics & development, 2017 - Elsevier
DNA methylation is a major epigenetic modification of vertebrate genomes that is mostly
associated with transcriptional repression. During embryogenesis, DNA methylation …

[PDF][PDF] Capturing totipotent stem cells

CL Baker, MF Pera - Cell stem cell, 2018 - cell.com
Minority subpopulations within embryonic stem cell cultures display an expanded
developmental potential similar to that of early embryo blastomeres or the early inner cell …

Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A

RDW Kelly, A Mahmud, M McKenzie… - Nucleic acids …, 2012 - academic.oup.com
DNA methylation is an essential mechanism controlling gene expression during
differentiation and development. We investigated the epigenetic regulation of the nuclear …