Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

Characterization, costs, cues and future perspectives of phenotypic plasticity

HM Schneider - Annals of botany, 2022 - academic.oup.com
Background Plastic responses of plants to the environment are ubiquitous. Phenotypic
plasticity occurs in many forms and at many biological scales, and its adaptive value …

Synthetic memory circuits for stable cell reprogramming in plants

JPB Lloyd, F Ly, P Gong, J Pflueger, T Swain… - Nature …, 2022 - nature.com
Plant biotechnology predominantly relies on a restricted set of genetic parts with limited
capability to customize spatiotemporal and conditional expression patterns. Synthetic gene …

Multi-omics pipeline and omics-integration approach to decipher plant's abiotic stress tolerance responses

R Roychowdhury, SP Das, A Gupta, P Parihar… - Genes, 2023 - mdpi.com
The present day's ongoing global warming and climate change adversely affect plants
through imposing environmental (abiotic) stresses and disease pressure. The major abiotic …

[HTML][HTML] Epigenetic processes in plant stress priming: Open questions and new approaches

CJ Harris, A Amtmann, J Ton - Current Opinion in Plant Biology, 2023 - Elsevier
Priming reflects the capacity of plants to memorise environmental stress experience and
improve their response to recurring stress. Epigenetic modifications in DNA and associated …

Differential regulation of flower transpiration during abiotic stress in annual plants

R Sinha, SI Zandalinas, Y Fichman, S Sen… - New …, 2022 - Wiley Online Library
Heat waves occurring during droughts can have a devastating impact on yield, especially if
they happen during the flowering and seed set stages of the crop cycle. Global warming and …

Single-molecule targeted accessibility and methylation sequencing of centromeres, telomeres and rDNAs in Arabidopsis

W Mo, Y Shu, B Liu, Y Long, T Li, X Cao, X Deng… - Nature Plants, 2023 - nature.com
The short read-length of next-generation sequencing makes it challenging to characterize
highly repetitive regions (HRRs) such as centromeres, telomeres and ribosomal DNAs …

Machine learning: its challenges and opportunities in plant system biology

M Hesami, M Alizadeh, AMP Jones… - Applied Microbiology and …, 2022 - Springer
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

Epigenetic regulation during plant development and the capacity for epigenetic memory

EA Hemenway, M Gehring - Annual review of plant biology, 2023 - annualreviews.org
The establishment, maintenance, and removal of epigenetic modifications provide an
additional layer of regulation, beyond genetically encoded factors, by which plants can …