The maternal-to-zygotic transition revisited
The development of animal embryos is initially directed by maternal gene products. Then,
during the maternal-to-zygotic transition (MZT), developmental control is handed to the …
during the maternal-to-zygotic transition (MZT), developmental control is handed to the …
Enhancer DNA methylation: implications for gene regulation
A Angeloni, O Bogdanovic - Essays in biochemistry, 2019 - portlandpress.com
DNA methylation involves the addition of a methyl group to the fifth carbon of the pyrimidine
cytosine ring (5-methylcytosine, 5mC). 5mC is widespread in vertebrate genomes where it is …
cytosine ring (5-methylcytosine, 5mC). 5mC is widespread in vertebrate genomes where it is …
A high-resolution mRNA expression time course of embryonic development in zebrafish
We have produced an mRNA expression time course of zebrafish development across 18
time points from 1 cell to 5 days post-fertilisation sampling individual and pools of embryos …
time points from 1 cell to 5 days post-fertilisation sampling individual and pools of embryos …
A map of cis-regulatory elements and 3D genome structures in zebrafish
The zebrafish (Danio rerio) has been widely used in the study of human disease and
development, and about 70% of the protein-coding genes are conserved between the two …
development, and about 70% of the protein-coding genes are conserved between the two …
Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation
T Pollex, A Rabinowitz, MC Gambetta… - Nature Genetics, 2024 - nature.com
To regulate expression, enhancers must come in proximity to their target gene. However, the
relationship between the timing of enhancer–promoter (E–P) proximity and activity remains …
relationship between the timing of enhancer–promoter (E–P) proximity and activity remains …
The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo
G Crispatzu, R Rehimi, T Pachano, T Bleckwehl… - Nature …, 2021 - nature.com
Poised enhancers (PEs) represent a genetically distinct set of distal regulatory elements that
control the expression of major developmental genes. Before becoming activated in …
control the expression of major developmental genes. Before becoming activated in …
Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes
While the field of epigenetics is increasingly recognized to contribute to the emergence of
phenotypes in mammalian research models across different developmental and …
phenotypes in mammalian research models across different developmental and …
[PDF][PDF] Systemic loss and gain of chromatin architecture throughout zebrafish development
The spatial organization of chromosomes is critical in establishing gene expression
programs. We generated in situ Hi-C maps throughout zebrafish development to gain insight …
programs. We generated in situ Hi-C maps throughout zebrafish development to gain insight …
Identification and functional characterization of cardiac pacemaker cells in zebrafish
F Tessadori, JH van Weerd, SB Burkhard, AO Verkerk… - 2012 - journals.plos.org
In the mammalian heart a conduction system of nodes and conducting cells generates and
transduces the electrical signals evoking myocardial contractions. Specialized pacemaker …
transduces the electrical signals evoking myocardial contractions. Specialized pacemaker …
Chromatin accessibility is associated with CRISPR-Cas9 efficiency in the zebrafish (Danio rerio)
MIE Uusi-Mäkelä, HR Barker, CA Bäuerlein… - PloS one, 2018 - journals.plos.org
CRISPR-Cas9 technology is routinely applied for targeted mutagenesis in model organisms
and cell lines. Recent studies indicate that the prokaryotic CRISPR-Cas9 system is affected …
and cell lines. Recent studies indicate that the prokaryotic CRISPR-Cas9 system is affected …