Methods and applications for single-cell and spatial multi-omics
K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …
from single cells is transforming our understanding of cell biology in health and disease. In …
Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation
Somatic mutations in cancer genes have been detected in clonal expansions across healthy
human tissue, including in clonal hematopoiesis. However, because mutated and wild-type …
human tissue, including in clonal hematopoiesis. However, because mutated and wild-type …
A mammalian methylation array for profiling methylation levels at conserved sequences
Infinium methylation arrays are not available for the vast majority of non-human mammals.
Moreover, even if species-specific arrays were available, probe differences between them …
Moreover, even if species-specific arrays were available, probe differences between them …
Simultaneous sequencing of genetic and epigenetic bases in DNA
DNA comprises molecular information stored in genetic and epigenetic bases, both of which
are vital to our understanding of biology. Most DNA sequencing approaches address either …
are vital to our understanding of biology. Most DNA sequencing approaches address either …
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution
methylcytosine (5mC) is the most important DNA modification in mammalian genomes. The
ideal method for 5mC localization would be both nondestructive of DNA and direct, without …
ideal method for 5mC localization would be both nondestructive of DNA and direct, without …
Liquid biopsies based on DNA methylation as biomarkers for the detection and prognosis of lung cancer
P Li, S Liu, L Du, G Mohseni, Y Zhang, C Wang - Clinical epigenetics, 2022 - Springer
Lung cancer (LC) is the main cause of cancer-related mortality. Most LC patients are
diagnosed in an advanced stage when the symptoms are obvious, and the prognosis is …
diagnosed in an advanced stage when the symptoms are obvious, and the prognosis is …
Epigenetic analysis of cell-free DNA by fragmentomic profiling
Cell-free DNA (cfDNA) fragmentation patterns contain important molecular information
linked to tissues of origin. We explored the possibility of using fragmentation patterns to …
linked to tissues of origin. We explored the possibility of using fragmentation patterns to …
DNA methylation analysis explores the molecular basis of plasma cell-free DNA fragmentation
Y An, X Zhao, Z Zhang, Z Xia, M Yang, L Ma… - Nature …, 2023 - nature.com
Plasma cell-free DNA (cfDNA) are small molecules generated through a non-random
fragmentation procedure. Despite commendable translational values in cancer liquid biopsy …
fragmentation procedure. Despite commendable translational values in cancer liquid biopsy …
Modular oxidation of cytosine modifications and their application in direct and quantitative sequencing of 5-hydroxymethylcytosine
H Xu, J Chen, J Cheng, L Kong, X Chen… - Journal of the …, 2023 - ACS Publications
Selective, efficient, and controllable oxidation of cytosine modifications is valuable for
epigenetic analyses, yet only limited progress has been made. Here, we present two …
epigenetic analyses, yet only limited progress has been made. Here, we present two …