Fundamental characteristics of AAA+ protein family structure and function

JM Miller, EJ Enemark - Archaea, 2016 - Wiley Online Library
Many complex cellular events depend on multiprotein complexes known as molecular
machines to efficiently couple the energy derived from adenosine triphosphate hydrolysis to …

DNA silencing by prokaryotic Argonaute proteins adds a new layer of defense against invading nucleic acids

S Willkomm, KS Makarova… - FEMS microbiology …, 2018 - academic.oup.com
Argonaute (Ago) proteins are encoded in all three domains of life and are responsible for the
regulation of intracellular nucleic acid levels. Whereas some Ago variants are able to cleave …

DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids

H Luo, F Gao - Nucleic acids research, 2019 - academic.oup.com
DoriC, a database of replication origins, was initially created to present the bacterial oriC s
predicted by Ori-Finder or determined by experiments in 2007. DoriC 5.0, an updated …

Archaeal cells share common size control with bacteria despite noisier growth and division

YJ Eun, PY Ho, M Kim, S LaRussa, L Robert… - Nature …, 2018 - nature.com
In nature, microorganisms exhibit different volumes spanning six orders of magnitude.
Despite their capability to create different sizes, a clonal population in a given environment …

Structure of eukaryotic DNA polymerase δ bound to the PCNA clamp while encircling DNA

F Zheng, RE Georgescu, H Li… - Proceedings of the …, 2020 - National Acad Sciences
The DNA polymerase (Pol) δ of Saccharomyces cerevisiae (Sc) is composed of the catalytic
subunit Pol3 along with two regulatory subunits, Pol31 and Pol32. Pol δ binds to …

[HTML][HTML] Archaea as a model system for molecular biology and biotechnology

F De Lise, R Iacono, M Moracci, A Strazzulli… - Biomolecules, 2023 - mdpi.com
Archaea represents the third domain of life, displaying a closer relationship with eukaryotes
than bacteria. These microorganisms are valuable model systems for molecular biology and …

Evolution of replication machines

NY Yao, ME O'Donnell - Critical Reviews in Biochemistry and …, 2016 - Taylor & Francis
The machines that decode and regulate genetic information require the translation,
transcription and replication pathways essential to all living cells. Thus, it might be expected …

Investigating the origins of membrane phospholipid biosynthesis genes using outgroup-free rooting

GA Coleman, RD Pancost… - Genome biology and …, 2019 - academic.oup.com
One of the key differences between Bacteria and Archaea is their canonical membrane
phospholipids, which are synthesized by distinct biosynthetic pathways with …

[HTML][HTML] How MCM loading and spreading specify eukaryotic DNA replication initiation sites

O Hyrien - F1000Research, 2016 - ncbi.nlm.nih.gov
DNA replication origins strikingly differ between eukaryotic species and cell types. Origins
are localized and can be highly efficient in budding yeast, are randomly located in early fly …

The Archaeal Cell Cycle

A Cezanne, S Foo, YW Kuo… - Annual Review of Cell and …, 2024 - annualreviews.org
Since first identified as a separate domain of life in the 1970s, it has become clear that
archaea differ profoundly from both eukaryotes and bacteria. In this review, we look across …