DNA methylation biomarkers: cancer and beyond

T Mikeska, JM Craig - Genes, 2014 - mdpi.com
Biomarkers are naturally-occurring characteristics by which a particular pathological process
or disease can be identified or monitored. They can reflect past environmental exposures …

Biomarkers in prostate cancer: what's new?

DA Sartori, DW Chan - Current opinion in oncology, 2014 - journals.lww.com
Several new tests, as discussed in this review, have become available during the last 2
years. Although the intended use of most of these tests is to distinguish PCa from benign …

Epigenome-wide association studies without the need for cell-type composition

J Zou, C Lippert, D Heckerman, M Aryee, J Listgarten - Nature methods, 2014 - nature.com
In epigenome-wide association studies, cell-type composition often differs between cases
and controls, yielding associations that simply tag cell type rather than reveal fundamental …

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

F Marabita, M Almgren, ME Lindholm, S Ruhrmann… - Epigenetics, 2013 - Taylor & Francis
The proper identification of differentially methylated CpGs is central in most epigenetic
studies. The Illumina HumanMethylation450 BeadChip is widely used to quantify DNA …

Epigenetic biomarkers: Current strategies and future challenges for their use in the clinical laboratory

JL García-Giménez, M Seco-Cervera… - Critical reviews in …, 2017 - Taylor & Francis
Epigenetic modifications and regulators represent potential molecular elements which
control relevant physiological and pathological features, thereby contributing to the natural …

Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

GH Rauscher, JK Kresovich, M Poulin, L Yan, V Macias… - BMC cancer, 2015 - Springer
Background Breast cancer formation is associated with frequent changes in DNA
methylation but the extent of very early alterations in DNA methylation and the biological …

Aberrant methylation patterns in cancer: a clinical view

A Videtic Paska, P Hudler - Biochemia medica, 2015 - hrcak.srce.hr
Sažetak Epigenetic mechanisms, such as DNA methylation, DNA hydroxymethylation, post-
translational modifications (PTMs) of histone proteins affecting nucleosome remodelling …

SOX9: The master regulator of cell fate in breast cancer

S Jana, BM Krishna, J Singhal, D Horne… - Biochemical …, 2020 - Elsevier
SRY-related high-mobility group box 9 (SOX9) is an indispensable transcription factor that
regulates multiple developmental pathways related to stemness, differentiation, and …

Epigenetic mechanisms in bone

P Vrtačnik, J Marc, B Ostanek - Clinical Chemistry and Laboratory …, 2014 - degruyter.com
Epigenetics refers to the study of mechanisms able to influence gene expression in a stable
and potentially heritable manner without altering the DNA sequence. These mechanisms …

Epigenetic effects of green tea polyphenols in cancer

SM Henning, P Wang, CL Carpenter, D Heber - Epigenomics, 2013 - Taylor & Francis
Epigenetics describes heritable alterations of gene expression and chromatin organization
without changes in DNA sequence. Both hypermethylation and hypomethylation of DNA can …