DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …

Principles and challenges of genome-wide DNA methylation analysis

PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …

[HTML][HTML] ORY-1001, a potent and selective covalent KDM1A inhibitor, for the treatment of acute leukemia

T Maes, C Mascaró, I Tirapu, A Estiarte, F Ciceri… - Cancer cell, 2018 - cell.com
The lysine-specific demethylase KDM1A is a key regulator of stem cell potential in acute
myeloid leukemia (AML). ORY-1001 is a highly potent and selective KDM1A inhibitor that …

Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer

C Plass, SM Pfister, AM Lindroth, O Bogatyrova… - Nature reviews …, 2013 - nature.com
Malignancies are characterized by extensive global reprogramming of epigenetic patterns,
including gains or losses in DNA methylation and changes to histone marks. Furthermore …

[HTML][HTML] Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer

J Weischenfeldt, R Simon, L Feuerbach, K Schlangen… - Cancer cell, 2013 - cell.com
Early-onset prostate cancer (EO-PCA) represents the earliest clinical manifestation of
prostate cancer. To compare the genomic alteration landscapes of EO-PCA with" …

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

TA Down, VK Rakyan, DJ Turner, P Flicek, H Li… - Nature …, 2008 - nature.com
DNA methylation is an indispensible epigenetic modification required for regulating the
expression of mammalian genomes. Immunoprecipitation-based methods for DNA …

Aberrant DNA methylation is a dominant mechanism in MDS progression to AML

Y Jiang, A Dunbar, LP Gondek, S Mohan… - Blood, The Journal …, 2009 - ashpublications.org
Myelodysplastic syndromes (MDSs) are clonal hematologic disorders that frequently
represent an intermediate disease stage before progression to acute myeloid leukemia …

Genomic patterns of DNA methylation: targets and function of an epigenetic mark

M Weber, D Schübeler - Current opinion in cell biology, 2007 - Elsevier
Methylation of cytosines can mediate epigenetic gene silencing and is the only known DNA
modification in eukaryotes. Recent efforts to map DNA methylation across mammalian …

Effects of ionizing radiation on DNA methylation: from experimental biology to clinical applications

IR Miousse, KR Kutanzi, I Koturbash - International journal of …, 2017 - Taylor & Francis
Purpose: Ionizing radiation (IR) is a ubiquitous environmental stressor with genotoxic and
epigenotoxic capabilities. Terrestrial IR, predominantly a low-linear energy transfer (LET) …

[HTML][HTML] DNA microarrays: a powerful genomic tool for biomedical and clinical research

V Trevino, F Falciani, HA Barrera-Saldaña - Molecular medicine, 2007 - Springer
Among the many benefits of the Human Genome Project are new and powerful tools such as
the genome-wide hybridization devices referred to as microarrays. Initially designed to …