Genetic variants in transcription factor binding sites in humans: triggered by natural selection and triggers of diseases
CC Tseng, MC Wong, WT Liao, CJ Chen… - International Journal of …, 2021 - mdpi.com
Variants of transcription factor binding sites (TFBSs) constitute an important part of the
human genome. Current evidence demonstrates close links between nucleotides within …
human genome. Current evidence demonstrates close links between nucleotides within …
Epigenomic approaches for the diagnosis of rare diseases
B Martinez-Delgado, MJ Barrero - Epigenomes, 2022 - mdpi.com
Rare diseases affect more than 300 million people worldwide. Diagnosing rare diseases is a
major challenge as they have different causes and etiologies. Careful assessment of clinical …
major challenge as they have different causes and etiologies. Careful assessment of clinical …
Genome-wide evaluation of the effect of short tandem repeat variation on local DNA methylation
Short tandem repeats (STRs) contribute significantly to genetic diversity in humans,
including disease-causing variation. Although the effect of STR variation on gene …
including disease-causing variation. Although the effect of STR variation on gene …
Identification of mammalian transcription factors that bind to inaccessible chromatin
RT Pop, A Pisante, D Nagy, PCN Martin… - Nucleic Acids …, 2023 - academic.oup.com
Transcription factors (TFs) are proteins that affect gene expression by binding to regulatory
regions of DNA in a sequence specific manner. The binding of TFs to DNA is controlled by …
regions of DNA in a sequence specific manner. The binding of TFs to DNA is controlled by …
Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression
Variable number tandem repeats (VNTRs) are composed of large tandemly repeated motifs,
many of which are highly polymorphic in copy number. However, because of their large size …
many of which are highly polymorphic in copy number. However, because of their large size …
Epigenetic and genetic population structure is coupled in a marine invertebrate
K Silliman, LH Spencer, SJ White… - Genome Biology and …, 2023 - academic.oup.com
Delineating the relative influence of genotype and the environment on DNA methylation is
critical for characterizing the spectrum of organism fitness as driven by adaptation and …
critical for characterizing the spectrum of organism fitness as driven by adaptation and …
Pollution induces epigenetic effects that are stably transmitted across multiple generations
It has been hypothesized that the effects of pollutants on phenotypes can be passed to
subsequent generations through epigenetic inheritance, affecting populations long after the …
subsequent generations through epigenetic inheritance, affecting populations long after the …
DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence
Epigenetic information defines tissue identity and is largely inherited in development
through DNA methylation. While studied mostly for mean differences, methylation also …
through DNA methylation. While studied mostly for mean differences, methylation also …
Downregulation of circulating hsa-miR-200c-3p correlates with dyslipidemia in patients with stable coronary artery disease
C Vancheri, E Morini, FR Prandi, F Barillà… - International Journal of …, 2023 - mdpi.com
Coronary heart disease (CHD), one of the leading causes of disability and death worldwide,
is a multifactorial disease whose early diagnosis is demanding. Thus, biomarkers predicting …
is a multifactorial disease whose early diagnosis is demanding. Thus, biomarkers predicting …
The functional impact of rare variation across the regulatory cascade
Each human genome has tens of thousands of rare genetic variants; however, identifying
impactful rare variants remains a major challenge. We demonstrate how use of personal …
impactful rare variants remains a major challenge. We demonstrate how use of personal …