Tracing the origin of cell-Free DNA molecules through tissue-Specific epigenetic signatures
All cell and tissue types constantly release DNA fragments into human body fluids by various
mechanisms including programmed cell death, accidental cell degradation and active …
mechanisms including programmed cell death, accidental cell degradation and active …
Cell-specific DNA methylation signatures in asthma
AA Hudon Thibeault, C Laprise - Genes, 2019 - mdpi.com
Asthma is a complex trait, often associated with atopy. The genetic contribution has been
evidenced by familial occurrence. Genome-wide association studies allowed for associating …
evidenced by familial occurrence. Genome-wide association studies allowed for associating …
Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites
Background The complex composition of different cell types within a tissue can be estimated
by deconvolution of bulk gene expression profiles or with various single-cell sequencing …
by deconvolution of bulk gene expression profiles or with various single-cell sequencing …
Spurious transcription and its impact on cell function
JT Wade, DC Grainger - Transcription, 2018 - Taylor & Francis
Most RNA polymerases can initiate transcription from diverse DNA template sequences with
relatively few outright sequence restraints. Recent reports have demonstrated that failure to …
relatively few outright sequence restraints. Recent reports have demonstrated that failure to …
The epigenetic machinery in the life cycle and pharmacoepigenetics
R Cacabelos, I Tellado, P Cacabelos - Pharmacoepigenetics, 2019 - Elsevier
Epigenetics is a discipline that studies potentially reversible heritable changes in gene
expression with no structural modifications in the DNA sequence. The epigenetic machinery …
expression with no structural modifications in the DNA sequence. The epigenetic machinery …
Gene Set Enrichment Analysis Detected Immune Cell‐Related Pathways Associated with Primary Sclerosing Cholangitis
P Luo, L Liu, W Hou, K Xu, P Xu - BioMed Research …, 2022 - Wiley Online Library
Aim. To explore various immune cell‐related causal pathways for primary sclerosing
cholangitis (PSC). Methods. Immune cell‐related pathway association study was conducted …
cholangitis (PSC). Methods. Immune cell‐related pathway association study was conducted …
[HTML][HTML] HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data
DNA methylation (5mC) and hydroxymethylation (5hmC) are chemical modifications of
cytosine bases which play a crucial role in epigenetic gene regulation. However, cost, data …
cytosine bases which play a crucial role in epigenetic gene regulation. However, cost, data …
HeteroMeth: a database of cell-to-cell heterogeneity in DNA methylation
Q Huan, Y Zhang, S Wu, W Qian - Genomics, Proteomics and …, 2018 - academic.oup.com
DNA methylation is an important epigenetic mark that plays a vital role in gene expression
and cell differentiation. The average DNA methylation level among a group of cells has been …
and cell differentiation. The average DNA methylation level among a group of cells has been …
Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage
ABSTRACT DNA methylation of CpG sites is commonly measured using Illumina Infinium
BeadChip platforms. The Infinium MethylationEPIC array has replaced the Infinium …
BeadChip platforms. The Infinium MethylationEPIC array has replaced the Infinium …
Inference of crosstalk effects between DNA methylation and lncRNA regulation in NSCLC
B Tang - BioMed research international, 2018 - Wiley Online Library
Intercellular crosstalk effects between DNA methylation and lncRNA regulation remain
elusive in lung carcinoma epigenetics. We present an application toolkit MetLnc in …
elusive in lung carcinoma epigenetics. We present an application toolkit MetLnc in …