Epigenome-wide association studies: current knowledge, strategies and recommendations

MP Campagna, A Xavier, J Lechner-Scott, V Maltby… - Clinical …, 2021 - Springer
The aetiology and pathophysiology of complex diseases are driven by the interaction
between genetic and environmental factors. The variability in risk and outcomes in these …

Interpreting omics data with pathway enrichment analysis

K Zhao, SY Rhee - Trends in Genetics, 2023 - cell.com
Pathway enrichment analysis is indispensable for interpreting omics datasets and
generating hypotheses. However, the foundations of enrichment analysis remain elusive to …

Functional enrichment analysis of regulatory elements

A Garcia-Moreno, R López-Domínguez… - Biomedicines, 2022 - mdpi.com
Statistical methods for enrichment analysis are important tools to extract biological
information from omics experiments. Although these methods have been widely used for the …

Refining epigenetic prediction of chronological and biological age

E Bernabeu, DL McCartney, DA Gadd, RF Hillary… - Genome Medicine, 2023 - Springer
Background Epigenetic clocks can track both chronological age (cAge) and biological age
(bAge). The latter is typically defined by physiological biomarkers and risk of adverse health …

Neonatal BCG vaccination is associated with a long-term DNA methylation signature in circulating monocytes

S Bannister, B Kim, J Domínguez-Andrés, G Kilic… - Science …, 2022 - science.org
Trained immunity describes the capacity of innate immune cells to develop heterologous
memory in response to certain exogenous exposures. This phenomenon mediates, at least …

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

T Liu, P Salguero, M Petek… - Nucleic Acids …, 2022 - academic.oup.com
PaintOmics is a web server for the integrative analysis and visualisation of multi-omics
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …

Exercise is associated with younger methylome and transcriptome profiles in human skeletal muscle

S Voisin, K Seale, M Jacques, S Landen… - Aging …, 2024 - Wiley Online Library
Exercise training prevents age‐related decline in muscle function. Targeting epigenetic
aging is a promising actionable mechanism and late‐life exercise mitigates epigenetic aging …

Sex differences in muscle protein expression and DNA methylation in response to exercise training

S Landen, M Jacques, D Hiam… - Biology of Sex …, 2023 - Springer
Background Exercise training elicits changes in muscle physiology, epigenomics,
transcriptomics, and proteomics, with males and females exhibiting differing physiological …

Fathers' preconception smoking and offspring DNA methylation

NT Kitaba, GTM Knudsen, A Johannessen… - Clinical …, 2023 - Springer
Background Experimental studies suggest that exposures may impact respiratory health
across generations via epigenetic changes transmitted specifically through male germ cells …

Meta‐analysis of genome‐wide DNA methylation and integrative omics of age in human skeletal muscle

S Voisin, M Jacques, S Landen… - Journal of Cachexia …, 2021 - Wiley Online Library
Background Knowledge of age‐related DNA methylation changes in skeletal muscle is
limited, yet this tissue is severely affected by ageing in humans. Methods We conducted a …