Epigenome-wide association studies: current knowledge, strategies and recommendations
The aetiology and pathophysiology of complex diseases are driven by the interaction
between genetic and environmental factors. The variability in risk and outcomes in these …
between genetic and environmental factors. The variability in risk and outcomes in these …
Interpreting omics data with pathway enrichment analysis
Pathway enrichment analysis is indispensable for interpreting omics datasets and
generating hypotheses. However, the foundations of enrichment analysis remain elusive to …
generating hypotheses. However, the foundations of enrichment analysis remain elusive to …
Functional enrichment analysis of regulatory elements
A Garcia-Moreno, R López-Domínguez… - Biomedicines, 2022 - mdpi.com
Statistical methods for enrichment analysis are important tools to extract biological
information from omics experiments. Although these methods have been widely used for the …
information from omics experiments. Although these methods have been widely used for the …
Refining epigenetic prediction of chronological and biological age
Background Epigenetic clocks can track both chronological age (cAge) and biological age
(bAge). The latter is typically defined by physiological biomarkers and risk of adverse health …
(bAge). The latter is typically defined by physiological biomarkers and risk of adverse health …
Neonatal BCG vaccination is associated with a long-term DNA methylation signature in circulating monocytes
S Bannister, B Kim, J Domínguez-Andrés, G Kilic… - Science …, 2022 - science.org
Trained immunity describes the capacity of innate immune cells to develop heterologous
memory in response to certain exogenous exposures. This phenomenon mediates, at least …
memory in response to certain exogenous exposures. This phenomenon mediates, at least …
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases
PaintOmics is a web server for the integrative analysis and visualisation of multi-omics
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …
Exercise is associated with younger methylome and transcriptome profiles in human skeletal muscle
Exercise training prevents age‐related decline in muscle function. Targeting epigenetic
aging is a promising actionable mechanism and late‐life exercise mitigates epigenetic aging …
aging is a promising actionable mechanism and late‐life exercise mitigates epigenetic aging …
Sex differences in muscle protein expression and DNA methylation in response to exercise training
Background Exercise training elicits changes in muscle physiology, epigenomics,
transcriptomics, and proteomics, with males and females exhibiting differing physiological …
transcriptomics, and proteomics, with males and females exhibiting differing physiological …
Fathers' preconception smoking and offspring DNA methylation
NT Kitaba, GTM Knudsen, A Johannessen… - Clinical …, 2023 - Springer
Background Experimental studies suggest that exposures may impact respiratory health
across generations via epigenetic changes transmitted specifically through male germ cells …
across generations via epigenetic changes transmitted specifically through male germ cells …
Meta‐analysis of genome‐wide DNA methylation and integrative omics of age in human skeletal muscle
Background Knowledge of age‐related DNA methylation changes in skeletal muscle is
limited, yet this tissue is severely affected by ageing in humans. Methods We conducted a …
limited, yet this tissue is severely affected by ageing in humans. Methods We conducted a …