[HTML][HTML] Multi-omics pipeline and omics-integration approach to decipher plant's abiotic stress tolerance responses
R Roychowdhury, SP Das, A Gupta, P Parihar… - Genes, 2023 - mdpi.com
The present day's ongoing global warming and climate change adversely affect plants
through imposing environmental (abiotic) stresses and disease pressure. The major abiotic …
through imposing environmental (abiotic) stresses and disease pressure. The major abiotic …
Recent advances in epigenetic triggering of climacteric fruit ripening
Y Ji, A Wang - Plant Physiology, 2023 - academic.oup.com
During ripening, fleshy fruits undergo irreversible changes in color, texture, sugar content,
aroma, and flavor to appeal to seed-dispersal vectors. The onset of climacteric fruit ripening …
aroma, and flavor to appeal to seed-dispersal vectors. The onset of climacteric fruit ripening …
[HTML][HTML] Simultaneous sequencing of genetic and epigenetic bases in DNA
DNA comprises molecular information stored in genetic and epigenetic bases, both of which
are vital to our understanding of biology. Most DNA sequencing approaches address either …
are vital to our understanding of biology. Most DNA sequencing approaches address either …
[HTML][HTML] DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis
L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
Background It is challenging to determine the effect of DNA methylation on the epigenetic
landscape and the function in higher organisms due to the lack of DNA methylation-free …
landscape and the function in higher organisms due to the lack of DNA methylation-free …
[HTML][HTML] Extrachromosomal circular DNA: a neglected nucleic acid molecule in plants
Throughout the years, most plant genomic studies were focused on nuclear chromosomes.
Extrachromosomal circular DNA (eccDNA) has largely been neglected for decades since its …
Extrachromosomal circular DNA (eccDNA) has largely been neglected for decades since its …
Epigenetic regulation during plant development and the capacity for epigenetic memory
EA Hemenway, M Gehring - Annual review of plant biology, 2023 - annualreviews.org
The establishment, maintenance, and removal of epigenetic modifications provide an
additional layer of regulation, beyond genetically encoded factors, by which plants can …
additional layer of regulation, beyond genetically encoded factors, by which plants can …
DNA methylation regulates biosynthesis of tanshinones and phenolic acids during growth of Salvia miltiorrhiza
X He, Y Chen, Y Xia, X Hong, H You, R Zhang… - Plant …, 2024 - academic.oup.com
DNA methylation plays a crucial role in the regulation of plant growth and the biosynthesis of
secondary metabolites. Danshen (Salvia miltiorrhiza) is a valuable Chinese herbal medicine …
secondary metabolites. Danshen (Salvia miltiorrhiza) is a valuable Chinese herbal medicine …
Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element–like silencing
AE Kornienko, V Nizhynska, A Molla Morales… - The Plant …, 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) are understudied and underannotated in plants. In
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …
Algal-bacterial consortium mediated system offers effective removal of nitrogen nutrients and antibiotic resistance genes
Y Tang, L Song, X Ji, S Huang, Y Yu, J Ye, W Xu… - Bioresource …, 2022 - Elsevier
The sulfonamide antibiotic resistance genes (ARGs) especially sul1 was identified as the
dominant in eutrophic water. The performance of Chlorella vulgaris-B. licheniformis …
dominant in eutrophic water. The performance of Chlorella vulgaris-B. licheniformis …
[HTML][HTML] How transposable elements are recognized and epigenetically silenced in plants?
Plant genomes are littered with transposable elements (TEs). Because TEs are potentially
highly mutagenic, host organisms have evolved a set of defense mechanisms to recognize …
highly mutagenic, host organisms have evolved a set of defense mechanisms to recognize …