[HTML][HTML] Multi-omics pipeline and omics-integration approach to decipher plant's abiotic stress tolerance responses

R Roychowdhury, SP Das, A Gupta, P Parihar… - Genes, 2023 - mdpi.com
The present day's ongoing global warming and climate change adversely affect plants
through imposing environmental (abiotic) stresses and disease pressure. The major abiotic …

Recent advances in epigenetic triggering of climacteric fruit ripening

Y Ji, A Wang - Plant Physiology, 2023 - academic.oup.com
During ripening, fleshy fruits undergo irreversible changes in color, texture, sugar content,
aroma, and flavor to appeal to seed-dispersal vectors. The onset of climacteric fruit ripening …

[HTML][HTML] Simultaneous sequencing of genetic and epigenetic bases in DNA

J Füllgrabe, WS Gosal, P Creed, S Liu, CK Lumby… - Nature …, 2023 - nature.com
DNA comprises molecular information stored in genetic and epigenetic bases, both of which
are vital to our understanding of biology. Most DNA sequencing approaches address either …

[HTML][HTML] DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
Background It is challenging to determine the effect of DNA methylation on the epigenetic
landscape and the function in higher organisms due to the lack of DNA methylation-free …

[HTML][HTML] Extrachromosomal circular DNA: a neglected nucleic acid molecule in plants

H Peng, M Mirouze, E Bucher - Current Opinion in Plant Biology, 2022 - Elsevier
Throughout the years, most plant genomic studies were focused on nuclear chromosomes.
Extrachromosomal circular DNA (eccDNA) has largely been neglected for decades since its …

Epigenetic regulation during plant development and the capacity for epigenetic memory

EA Hemenway, M Gehring - Annual review of plant biology, 2023 - annualreviews.org
The establishment, maintenance, and removal of epigenetic modifications provide an
additional layer of regulation, beyond genetically encoded factors, by which plants can …

DNA methylation regulates biosynthesis of tanshinones and phenolic acids during growth of Salvia miltiorrhiza

X He, Y Chen, Y Xia, X Hong, H You, R Zhang… - Plant …, 2024 - academic.oup.com
DNA methylation plays a crucial role in the regulation of plant growth and the biosynthesis of
secondary metabolites. Danshen (Salvia miltiorrhiza) is a valuable Chinese herbal medicine …

Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element–like silencing

AE Kornienko, V Nizhynska, A Molla Morales… - The Plant …, 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) are understudied and underannotated in plants. In
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …

Algal-bacterial consortium mediated system offers effective removal of nitrogen nutrients and antibiotic resistance genes

Y Tang, L Song, X Ji, S Huang, Y Yu, J Ye, W Xu… - Bioresource …, 2022 - Elsevier
The sulfonamide antibiotic resistance genes (ARGs) especially sul1 was identified as the
dominant in eutrophic water. The performance of Chlorella vulgaris-B. licheniformis …

[HTML][HTML] How transposable elements are recognized and epigenetically silenced in plants?

B Liu, M Zhao - Current Opinion in Plant Biology, 2023 - Elsevier
Plant genomes are littered with transposable elements (TEs). Because TEs are potentially
highly mutagenic, host organisms have evolved a set of defense mechanisms to recognize …