Sensitivity of transcription factors to DNA methylation

É Héberlé, AF Bardet - Essays in biochemistry, 2019 - portlandpress.com
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …

DNA methylation patterns and epigenetic memory

A Bird - Genes & development, 2002 - genesdev.cshlp.org
The character of a cell is defined by its constituent proteins, which are the result of specific
patterns of gene expression. Crucial determinants of gene expression patterns are DNA …

[PDF][PDF] Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing

JK Nuñez, J Chen, GC Pommier, JZ Cogan… - Cell, 2021 - cell.com
A general approach for heritably altering gene expression has the potential to enable many
discovery and therapeutic efforts. Here, we present CRISPRoff—a programmable epigenetic …

[HTML][HTML] Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability

A de Mendoza, TV Nguyen, E Ford, D Poppe… - Genome Biology, 2022 - Springer
Background Cytosine DNA methylation is widely described as a transcriptional repressive
mark with the capacity to silence promoters. Epigenome engineering techniques enable …

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

M Weber, I Hellmann, MB Stadler, L Ramos, S Pääbo… - Nature …, 2007 - nature.com
To gain insight into the function of DNA methylation at cis-regulatory regions and its impact
on gene expression, we measured methylation, RNA polymerase occupancy and histone …

Microsatellites in different eukaryotic genomes: survey and analysis

G Tóth, Z Gáspári, J Jurka - Genome research, 2000 - genome.cshlp.org
We examined the abundance of microsatellites with repeated unit lengths of 1–6 base pairs
in several eukaryotic taxonomic groups: primates, rodents, other mammals, nonmammalian …

Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA

JD Lewis, RR Meehan, WJ Henzel, I Maurer-Fogy… - Cell, 1992 - cell.com
Methylation of mammalian DNA can lead to repression of transcription and alteration of
chromatin structure. Recent evidence suggests that both effects are the result of an …

DNA methylation and gene function

A Razin, AD Riggs - Science, 1980 - science.org
In most higher organisms, DNA is modified after synthesis by the enzymatic conversion of
many cytosine residues to 5-methylcytosine. For several years, control of gene activity by …

Identification and characterization of a family of mammalian methyl CpG-binding proteins

B Hendrich, A Bird - Genetics Research, 1998 - cambridge.org
We describe the construction, evaluation and application of cDNA libraries from unfertilized
oocytes, and single 2-cell, 4-cell, 7-cell and blastocyst stage embryos. The corresponding …

Inherited epigenetic variation—revisiting soft inheritance

EJ Richards - Nature Reviews Genetics, 2006 - nature.com
Phenotypic variation is traditionally parsed into components that are directed by genetic and
environmental variation. The line between these two components is blurred by inherited …