Genomic DNA methylation: the mark and its mediators

RJ Klose, AP Bird - Trends in biochemical sciences, 2006 - cell.com
Methylation of DNA at position five of the cytosine ring occurs at most CpG dinucleotides in
the mammalian genome and is essential for embryonic viability. With several of the key …

The DNA methylation paradox

PA Jones - Trends in genetics, 1999 - cell.com
The methylation of CpG islands is often equated with transcriptional inactivity and there is
overwhelming evidence that this is the case for islands located in gene promoters. Such …

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

K Yu, F Chedin, CL Hsieh, TE Wilson, MR Lieber - Nature immunology, 2003 - nature.com
The mechanism responsible for immunoglobulin class switch recombination is unknown.
Previous work has shown that class switch sequences have the unusual property of forming …

Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells

MC Lorincz, DR Dickerson, M Schmitt… - Nature structural & …, 2004 - nature.com
Transcriptional silencing in mammals is often associated with promoter methylation.
However, a considerable number of genomic methylated CpGs exist in transposable …

Molecular mechanisms of gene silencing mediated by DNA methylation

M Curradi, A Izzo, G Badaracco… - Molecular and cellular …, 2002 - Am Soc Microbiol
DNA methylation and chromatin modification operate along a common pathway to repress
transcription; accordingly, several experiments demonstrate that the effects of DNA …

In vivo activity of murine de novo methyltransferases, Dnmt3a and Dnmt3b

CL Hsieh - Molecular and cellular biology, 1999 - Taylor & Francis
The putative de novo methyltransferases, Dnmt3a and Dnmt3b, were reported to have weak
methyltransferase activity in methylating the 3′ long terminal repeat of Moloney murine …

Silencing effect of CpG island hypermethylation and histone modifications on O6-methylguanine-DNA methyltransferase (MGMT) gene expression in human cancer

T Nakagawachi, H Soejima, T Urano, W Zhao… - Oncogene, 2003 - nature.com
Abstract O6-methylguanine-DNA methyltransferase (MGMT) repairs the cytotoxic and
mutagenic O6-alkylguanine produced by alkylating agents such as chemotherapeutic …

DNA methylation dynamics in plant genomes

M Gehring, S Henikoff - Biochimica et Biophysica Acta (BBA)-Gene …, 2007 - Elsevier
Cytosine bases are extensively methylated in the DNA of plant genomes. DNA methylation
has been implicated in the silencing of transposable elements and genes, and loss of …

DNA methylation dictates histone H3K4 methylation

CY Okitsu, CL Hsieh - Molecular and cellular biology, 2007 - Taylor & Francis
Histone lysine methylation and DNA methylation contribute to transcriptional regulation. We
have previously shown that acetylated histones are associated with unmethylated DNA and …

Selection against PUMA gene expression in Myc-driven B-cell lymphomagenesis

SP Garrison, JR Jeffers, C Yang… - … and cellular biology, 2008 - Am Soc Microbiol
The p53 tumor suppressor pathway limits oncogenesis by inducing cell cycle arrest or
apoptosis. A key p53 target gene is PUMA, which encodes a BH3-only proapoptotic protein …