[HTML][HTML] Modification mapping by nanopore sequencing

LK White, JR Hesselberth - Frontiers in Genetics, 2022 - frontiersin.org
Next generation sequencing (NGS) has provided biologists with an unprecedented view into
biological processes and their regulation over the past 2 decades, fueling a wave of …

Machine learning-assisted global DNA methylation fingerprint analysis for differentiating early-stage lung cancer from benign lung diseases

D Lu, Y Chen, L Ke, W Wu, L Yuan, S Feng… - Biosensors and …, 2023 - Elsevier
DNA methylation plays a critical role in the development of human tumors. However, routine
characterization of DNA methylation can be time-consuming and labor-intensive. We herein …

E3 ubiquitin ligase RNF180 prevents excessive PCDH10 methylation to suppress the proliferation and metastasis of gastric cancer cells by promoting ubiquitination of …

N Zhang, X Gao, Q Yuan, X Fu, P Wang, F Cai, H Liu… - Clinical …, 2023 - Springer
Background Downregulation of certain tumor-suppressor genes (TSGs) by aberrant
methylation of CpG islands in the promoter region contributes a great deal to the …

[HTML][HTML] In silico analysis of the solute carrier (SLC) family in cancer indicates a link among DNA methylation, metabolic adaptation, drug response, and immune …

A Lavoro, L Falzone, B Tomasello, GN Conti… - Frontiers in …, 2023 - frontiersin.org
Introduction: The oncogenic transformation is driven by genetic and epigenetic alterations
influencing cancer cell fate. These alterations also result in metabolic reprogramming by …

An Epigenetic LINE-1-Based Mechanism in Cancer

P Lavia, I Sciamanna, C Spadafora - International Journal of Molecular …, 2022 - mdpi.com
In the last fifty years, large efforts have been deployed in basic research, clinical oncology,
and clinical trials, yielding an enormous amount of information regarding the molecular …

[HTML][HTML] DNA methylation: from cancer biology to clinical perspectives

C Chen, Z Wang, Y Ding, L Wang, S Wang… - Frontiers in Bioscience …, 2022 - imrpress.com
DNA methylation plays an important role in the silence of tissue-specific genes to prevent
them from being expressed in the wrong tissue. Aberrant DNA methylation (genome-wide …

H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development

Y Yu, X Li, R Jiao, Y Lu, X Jiang, X Li - Cell & Bioscience, 2023 - Springer
Background Bivalent genes, of which promoters are marked by both H3K4me3
(trimethylation of histone H3 on lysine 4) and H3K27me3 (trimethylation of histone H3 on …

Exploration of prognosis and immunometabolism landscapes in ER+ breast cancer based on a novel lipid metabolism-related signature

L Shen, H Huang, J Li, W Chen, Y Yao, J Hu… - Frontiers in …, 2023 - frontiersin.org
Introduction Lipid metabolic reprogramming is gaining attention as a hallmark of cancers.
Recent mounting evidence indicates that the malignant behavior of breast cancer (BC) is …

Inhibition of Cancer Development by Natural Plant Polyphenols: Molecular Mechanisms

A Lyubitelev, V Studitsky - International Journal of Molecular Sciences, 2023 - mdpi.com
Malignant tumors remain one of the main sources of morbidity and mortality around the
world. A chemotherapeutic approach to cancer treatment poses a multitude of challenges …

[HTML][HTML] The methylation game: epigenetic and epitranscriptomic dynamics of 5-methylcytosine

A Alagia, M Gullerova - Frontiers in Cell and Developmental Biology, 2022 - frontiersin.org
DNA and RNA methylation dynamics have been linked to a variety of cellular processes
such as development, differentiation, and the maintenance of genome integrity. The correct …