Multi-omics integration in the age of million single-cell data

Z Miao, BD Humphreys, AP McMahon… - Nature Reviews …, 2021 - nature.com
An explosion in single-cell technologies has revealed a previously underappreciated
heterogeneity of cell types and novel cell-state associations with sex, disease, development …

[HTML][HTML] Modelling metabolic diseases and drug response using stem cells and organoids

W Hu, MA Lazar - Nature Reviews Endocrinology, 2022 - nature.com
Metabolic diseases, including obesity, diabetes mellitus and cardiovascular disease, are a
major threat to health in the modern world, but efforts to understand the underlying …

Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease

H Liu, T Doke, D Guo, X Sheng, Z Ma, J Park, HMT Vy… - Nature …, 2022 - nature.com
More than 800 million people suffer from kidney disease, yet the mechanism of kidney
dysfunction is poorly understood. In the present study, we define the genetic association with …

[HTML][HTML] Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression

PC Wilson, Y Muto, H Wu, A Karihaloo… - Nature …, 2022 - nature.com
The proximal tubule is a key regulator of kidney function and glucose metabolism. Diabetic
kidney disease leads to proximal tubule injury and changes in chromatin accessibility that …

Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments

X Sheng, Y Guan, Z Ma, J Wu, H Liu, C Qiu, S Vitale… - Nature …, 2021 - nature.com
The functional interpretation of genome-wide association studies (GWAS) is challenging due
to the cell-type-dependent influences of genetic variants. Here, we generated …

[HTML][HTML] A single genetic locus controls both expression of DPEP1/CHMP1A and kidney disease development via ferroptosis

Y Guan, X Liang, Z Ma, H Hu, H Liu, Z Miao… - Nature …, 2021 - nature.com
Genome-wide association studies (GWAS) have identified loci for kidney disease, but the
causal variants, genes, and pathways remain unknown. Here we identify two kidney disease …

Epigenetic mechanisms in diabetic vascular complications and metabolic memory: the 2020 Edwin Bierman Award Lecture

R Natarajan - Diabetes, 2021 - Am Diabetes Assoc
Macrovascular complications such as atherosclerosis, myocardial infarction and stroke, and
microvascular complications such as nephropathy, retinopathy, and neuropathy are the …

[HTML][HTML] Transcriptome-wide association analysis identifies DACH1 as a kidney disease risk gene that contributes to fibrosis

T Doke, S Huang, C Qiu, H Liu, Y Guan… - The Journal of …, 2021 - Am Soc Clin Investig
Genome-wide association studies (GWAS) for kidney function identified hundreds of risk
regions; however, the causal variants, target genes, cell types, and disease mechanisms …

Donor and recipient polygenic risk scores influence the risk of post-transplant diabetes

A Shaked, BL Loza, E Van Loon, KM Olthoff, W Guan… - Nature Medicine, 2022 - nature.com
Post-transplant diabetes mellitus (PTDM) reduces allograft and recipient life span. Polygenic
risk scores (PRSs) show robust association with greater risk of developing type 2 diabetes …

[HTML][HTML] Emerging role of long non-coding RNAs in diabetic vascular complications

VS Tanwar, MA Reddy, R Natarajan - Frontiers in endocrinology, 2021 - frontiersin.org
Chronic metabolic disorders such as obesity and diabetes are associated with accelerated
rates of macrovascular and microvascular complications, which are leading causes of …