Arabidopsis ING and Alfin1‐like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers

WY Lee, D Lee, WI Chung, CS Kwon - The Plant Journal, 2009 - Wiley Online Library
In yeast and animals, tri‐and dimethylation of histone H3 at lysine 4 (H3K4me3/2) are
markers of transcriptionally active genes that have recently been shown to be primary …

[HTML][HTML] Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis

S Oh, S Park, S van Nocker - PLoS genetics, 2008 - journals.plos.org
In budding yeast, intragenic histone modification is linked with transcriptional elongation
through the conserved regulator Paf1C. To investigate Paf1C-related function in higher …

[HTML][HTML] Transgenerational variations in DNA methylation induced by drought stress in two rice varieties with distinguished difference to drought resistance

X Zheng, L Chen, M Li, Q Lou, H Xia, P Wang, T Li… - PloS one, 2013 - journals.plos.org
Adverse environmental conditions have large impacts on plant growth and crop production.
One of the crucial mechanisms that plants use in variable and stressful natural environments …

Induced and constitutive DNA methylation in a salinity-tolerant wheat introgression line

M Wang, L Qin, C Xie, W Li, J Yuan… - Plant and Cell …, 2014 - academic.oup.com
Cytosine methylation is a well recognized epigenetic mark. Here, the methylation status of a
salinity-tolerant wheat cultivar (cv. SR3, derived from a somatic hybridization event) and its …

Epigenetic gene regulation by plant Jumonji group of histone demethylase

X Chen, Y Hu, DX Zhou - Biochimica et Biophysica Acta (BBA)-Gene …, 2011 - Elsevier
Histone methylation plays an important role in epigenetic regulation of gene expression.
Reversible methylation/demethylation of several histone lysine residues is mediated by …

[HTML][HTML] Efficient chromatin profiling of H3K4me3 modification in cotton using CUT&Tag

X Tao, S Feng, T Zhao, X Guan - Plant methods, 2020 - Springer
Abstract Background In 2019, Kaya-Okur et al. reported on the cleavage under targets and
tagmentation (CUT&Tag) technology for efficient profiling of epigenetically modified DNA …

[PDF][PDF] Genome-wide analysis of histone modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica

Z Du, H Li, Q Wei, X Zhao, C Wang, Q Zhu, X Yi, W Xu… - Molecular plant, 2013 - cell.com
While previous studies have shown that histone modifications could influence plant growth
and development by regulating gene transcription, knowledge about the relationships …

Short-read sequencing technologies for transcriptional analyses

SA Simon, J Zhai, RS Nandety… - Annual review of …, 2009 - annualreviews.org
The technological advances in DNA sequencing over the past five years have changed our
approaches to gene expression analysis, fundamentally altering the basic methods used …

[HTML][HTML] Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids

G He, B Chen, X Wang, X Li, J Li, H He, M Yang, L Lu… - Genome biology, 2013 - Springer
Background Recent genome-wide studies suggested that in addition to genetic variations,
epigenetic variations may also be associated with differential gene expression and growth …

[HTML][HTML] Dynamic Epigenetic Regulation of Gene Expression during the Life Cycle of Malaria Parasite Plasmodium falciparum

AP Gupta, WH Chin, L Zhu, S Mok, YH Luah… - PLoS …, 2013 - journals.plos.org
Epigenetic mechanisms are emerging as one of the major factors of the dynamics of gene
expression in the human malaria parasite, Plasmodium falciparum. To elucidate the role of …