[HTML][HTML] H3K4me2 functions as a repressive epigenetic mark in plants

Y Liu, K Liu, L Yin, Y Yu, J Qi, WH Shen, J Zhu… - Epigenetics & …, 2019 - Springer
Abstract Background In animals, H3K4me2 and H3K4me3 are enriched at the transcription
start site (TSS) and function as epigenetic marks that regulate gene transcription, but their …

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

F Roudier, FK Teixeira, V Colot - Trends in Genetics, 2009 - cell.com
Packaging DNA into chromatin is pivotal for the regulation of genome activity in eukaryotes.
This chromatin-level control relies on a range of histone modifications and variants …

[HTML][HTML] Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice

Y Ouyang, X Huang, Z Lu, J Yao - BMC genomics, 2012 - Springer
Background WD40 proteins represent a large family in eukaryotes, which have been
involved in a broad spectrum of crucial functions. Systematic characterization and co …

RNA-directed DNA methylation and demethylation in plants

V Chinnusamy, JK Zhu - Science in China Series C: Life Sciences, 2009 - Springer
RNA-directed DNA methylation (RdDM) is a nuclear process in which small interfering RNAs
(siRNAs) direct the cytosine methylation of DNA sequences that are complementary to the …

Rice epigenomics and epigenetics: challenges and opportunities

X Chen, DX Zhou - Current opinion in plant biology, 2013 - Elsevier
During recent years rice genome-wide epigenomic information such as DNA methylation
and histone modifications, which are important for genome activity has been accumulated …

The Arabidopsis DREAM complex antagonizes WDR5A to modulate histone H3K4me2/3 deposition for a subset of genome repression

Y Wang, Y Fan, D Fan, Y Zhang… - Proceedings of the …, 2022 - National Acad Sciences
The master transcriptional repressor DREAM (dimerization partner, RB-like, E2F and
multivulval class B) complex regulates the cell cycle in eukaryotes, but much remains …

An adaptive epigenetic memory in conifers with important implications for seed production

I Yakovlev, CG Fossdal, T Skrøppa, JE Olsen… - Seed Science …, 2012 - cambridge.org
Conifers are evolutionarily more ancient than their angiosperm counterparts, and thus some
adaptive mechanisms and features influenced by epigenetic mechanisms appear more …

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

Y Hu, D Liu, X Zhong, C Zhang… - Proceedings of the …, 2012 - National Acad Sciences
Histone lysine methylation is an important component of the epigenetic system demarcating
transcriptionally active and inactive chromatin domains. It is of primary importance in …

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium

MF Seidl, HM Kramer, DE Cook, GL Fiorin… - MBio, 2020 - Am Soc Microbiol
Centromeres are chromosomal regions that are crucial for chromosome segregation during
mitosis and meiosis, and failed centromere formation can contribute to chromosomal …

[HTML][HTML] Genome-wide DNA Methylation Profiles and Their Relationships with mRNA and the microRNA Transcriptome in Bovine Muscle Tissue (Bos taurine)

YZ Huang, JJ Sun, LZ Zhang, CJ Li, JE Womack… - Scientific reports, 2014 - nature.com
DNA methylation is a key epigenetic modification in mammals and plays important roles in
muscle development. We sampled longissimus dorsi muscle (LDM) from a well-known elite …