[PDF][PDF] Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice

JY Choi, MD Purugganan - Molecular Biology and Evolution, 2018 - academic.oup.com
Plant genomes contain numerous transposable elements (TEs), and many hypotheses on
the evolutionary drivers that restrict TE activity have been postulated. Few models, however …

[HTML][HTML] Epigenetic control of defense genes following MeJA-induced priming in rice (O. sativa)

B Laura, P Silvia, F Francesca, S Benedetta… - Journal of plant …, 2018 - Elsevier
In plant defense, priming is a physiological process by which a plant prepares to more
quickly or aggressively respond to a future biotic or abiotic stress. This unique physiological …

The gymnastics of epigenomics in rice

A Banerjee, A Roychoudhury - Plant cell reports, 2018 - Springer
Epigenomics is represented by the high-throughput investigations of genome-wide
epigenetic alterations, which ultimately dictate genomic, transcriptomic, proteomic and …

Molecular mechanisms of epigenetic variation in plants

R Fujimoto, T Sasaki, R Ishikawa, K Osabe… - International Journal of …, 2012 - mdpi.com
Natural variation is defined as the phenotypic variation caused by spontaneous mutations. In
general, mutations are associated with changes of nucleotide sequence, and many …

Two distinct roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at promoters and within transcribed regions of ATX1-regulated genes

Y Ding, Z Avramova, M Fromm - The plant cell, 2011 - academic.oup.com
The Arabidopsis thaliana trithorax-like protein, ATX1, shares common structural domains,
has similar histone methyltransferase (HMT) activity, and belongs in the same phylogenetic …

Mutations in the Rice OsCHR4 Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax

T Guo, D Wang, J Fang, J Zhao, S Yuan… - International Journal of …, 2019 - mdpi.com
Leaf blade width, curvature, and cuticular wax are important agronomic traits of rice. Here,
we report the rice Oschr4-5 mutant characterized by pleiotropic phenotypes, including …

Hypermethylation of auxin-responsive motifs in the promoters of the transcription factor genes accompanies the somatic embryogenesis induction in Arabidopsis

D Grzybkowska, K Nowak, MD Gaj - International Journal of Molecular …, 2020 - mdpi.com
The auxin-induced embryogenic reprogramming of plant somatic cells is associated with
extensive modulation of the gene expression in which epigenetic modifications, including …

Epigenetic imbalance and the floral developmental abnormality of the in vitro-regenerated oil palm Elaeis guineensis

E Jaligot, S Adler, E Debladis, T Beulé… - Annals of …, 2011 - academic.oup.com
Background The large-scale clonal propagation of oil palm (Elaeis guineensis) is being
stalled by the occurrence of the mantled somaclonal variation. Indeed, this abnormality …

DNA methylation is involved in sexual differentiation and sex chromosome evolution in the dioecious plant garden asparagus

SF Li, CC Lv, LN Lan, KL Jiang, YL Zhang… - Horticulture …, 2021 - academic.oup.com
DNA methylation is a crucial regulatory mechanism in many biological processes. However,
limited studies have dissected the contribution of DNA methylation to sexual differentiation in …

Chromatin regulation in plant hormone and plant stress responses

L Wang, H Qiao - Current opinion in plant biology, 2020 - Elsevier
The gene expression is tightly regulated temporally and spatially to ensure the plant and
animal proper development, function, growth, and survival under different environmental …