G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
C Esnault, T Magat, A Zine El Aabidine… - Nature …, 2023 - nature.com
Metazoan promoters are enriched in secondary DNA structure-forming motifs, such as G-
quadruplexes (G4s). Here we describe 'G4access', an approach to isolate and sequence …
quadruplexes (G4s). Here we describe 'G4access', an approach to isolate and sequence …
The DNA methyltransferase DNMT3C protects male germ cells from transposon activity
J Barau, A Teissandier, N Zamudio, S Roy, V Nalesso… - Science, 2016 - science.org
DNA methylation is prevalent in mammalian genomes and plays a central role in the
epigenetic control of development. The mammalian DNA methylation machinery is thought …
epigenetic control of development. The mammalian DNA methylation machinery is thought …
[HTML][HTML] A data-driven approach to preprocessing Illumina 450K methylation array data
Background As the most stable and experimentally accessible epigenetic mark, DNA
methylation is of great interest to the research community. The landscape of DNA …
methylation is of great interest to the research community. The landscape of DNA …
A survey of tissue-specific genomic imprinting in mammals
AR Prickett, RJ Oakey - Molecular Genetics and Genomics, 2012 - Springer
In mammals, most somatic cells contain two copies of each autosomal gene, one inherited
from each parent. When a gene is expressed, both parental alleles are usually transcribed …
from each parent. When a gene is expressed, both parental alleles are usually transcribed …
Next generation sequencing in epigenetics: insights and challenges
The epigenetics community was an early adopter of next generation sequencing (NGS).
NGS-based studies have provided detailed and comprehensive views of epigenetic …
NGS-based studies have provided detailed and comprehensive views of epigenetic …
[HTML][HTML] An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells
DNA methylation is extensively remodeled during mammalian gametogenesis and
embryogenesis. Most transposons become hypomethylated, raising the question of their …
embryogenesis. Most transposons become hypomethylated, raising the question of their …
[HTML][HTML] Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
Differential methylation of the two parental genomes in placental mammals is essential for
genomic imprinting and embryogenesis. To systematically study this epigenetic process, we …
genomic imprinting and embryogenesis. To systematically study this epigenetic process, we …
High-resolution analysis of parent-of-origin allelic expression in the mouse brain
Genomic imprinting results in preferential expression of the paternal or maternal allele of
certain genes. We have performed a genome-wide characterization of imprinting in the …
certain genes. We have performed a genome-wide characterization of imprinting in the …
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse
Genomic imprinting is an epigenetic process that restricts gene expression to either the
maternally or paternally inherited allele,. Many theories have been proposed to explain its …
maternally or paternally inherited allele,. Many theories have been proposed to explain its …
[HTML][HTML] Critical evaluation of imprinted gene expression by RNA–Seq: a new perspective
In contrast to existing estimates of approximately 200 murine imprinted genes, recent work
based on transcriptome sequencing uncovered parent-of-origin allelic effects at more than …
based on transcriptome sequencing uncovered parent-of-origin allelic effects at more than …