Epigenetics as a mediator of plasticity in cancer

AP Feinberg, A Levchenko - Science, 2023 - science.org
The concept of an epigenetic landscape describing potential cellular fates arising from
pluripotent cells, first advanced by Conrad Waddington, has evolved in light of experiments …

Epigenetics, DNA damage, and aging

C Soto-Palma, LJ Niedernhofer… - The Journal of …, 2022 - Am Soc Clin Investig
Over the course of a human lifespan, genome integrity erodes, leading to an increased
abundance of several types of chromatin changes. The abundance of DNA lesions …

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

S Guo, D Diep, N Plongthongkum, HL Fung, K Zhang… - Nature …, 2017 - nature.com
Adjacent CpG sites in mammalian genomes can be co-methylated owing to the processivity
of methyltransferases or demethylases, yet discordant methylation patterns have also been …

Epigenetics and colorectal cancer

VV Lao, WM Grady - Nature reviews Gastroenterology & hepatology, 2011 - nature.com
Colorectal cancer (CRC) is a leading cause of cancer deaths worldwide. It results from an
accumulation of genetic and epigenetic changes in colon epithelial cells, which transforms …

Analysing and interpreting DNA methylation data

C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …

DNA methylation: conducting the orchestra from exposure to phenotype?

FAD Leenen, CP Muller, JD Turner - Clinical epigenetics, 2016 - Springer
Abstract DNA methylation, through 5-methyl-and 5-hydroxymethylcytosine (5mC and 5hmC),
is considered to be one of the principal interfaces between the genome and our …

[HTML][HTML] Whole genome DNA methylation: beyond genes silencing

R Tirado-Magallanes, K Rebbani, R Lim, S Pradhan… - Oncotarget, 2017 - ncbi.nlm.nih.gov
The combination of DNA bisulfite treatment with high-throughput sequencing technologies
has enabled investigation of genome-wide DNA methylation at near base pair level …

Dynamic antagonism between key repressive pathways maintains the placental epigenome

R Weigert, S Hetzel, N Bailly, C Haggerty, IA Ilik… - Nature Cell …, 2023 - nature.com
DNA and Histone 3 Lysine 27 methylation typically function as repressive modifications and
operate within distinct genomic compartments. In mammals, the majority of the genome is …

Prediction of genome-wide DNA methylation in repetitive elements

Y Zheng, BT Joyce, L Liu, Z Zhang… - Nucleic acids …, 2017 - academic.oup.com
DNA methylation in repetitive elements (RE) suppresses their mobility and maintains
genomic stability, and decreases in it are frequently observed in tumor and/or surrogate …

Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications

N Kitkumthorn, A Mutirangura - Clinical epigenetics, 2011 - Springer
Epigenetic changes in long interspersed nuclear element-1s (LINE-1s or L1s) occur early
during the process of carcinogenesis. A lower methylation level (hypomethylation) of LINE-1 …