[HTML][HTML] DNA methylation: Precise modulation of chromatin structure and dynamics
DNA methylation plays a vital role in epigenetic regulation in both plants and animals, and
typically occurs at the 5-carbon position of the cytosine pyrimidine ring within the CpG …
typically occurs at the 5-carbon position of the cytosine pyrimidine ring within the CpG …
[HTML][HTML] Studies of the Mechanism of Nucleosome Dynamics: A Review on Multifactorial Regulation from Computational and Experimental Cases
D Shi, Y Huang, C Bai - Polymers, 2023 - mdpi.com
The nucleosome, which organizes the long coil of genomic DNA in a highly condensed,
polymeric way, is thought to be the basic unit of chromosomal structure. As the most …
polymeric way, is thought to be the basic unit of chromosomal structure. As the most …
Asymmetric Periodic Boundary Conditions for All-Atom Molecular Dynamics and Coarse-Grained Simulations of Nucleic Acids
Periodic boundary conditions are commonly applied in molecular dynamics simulations in
the microcanonical (NVE), canonical (NVT), and isothermal–isobaric (NpT) ensembles. In …
the microcanonical (NVE), canonical (NVT), and isothermal–isobaric (NpT) ensembles. In …
Molecular dynamics analysis of biomolecular systems including nucleic acids
With the recent progress in structural biology and genome biology, structural dynamics of
molecular systems that include nucleic acids has attracted attention in the context of gene …
molecular systems that include nucleic acids has attracted attention in the context of gene …
m6A methylation potentiates cytosolic dsDNA recognition in a sequence-specific manner
M Balzarolo, S Engels, AJ de Jong… - Open …, 2021 - royalsocietypublishing.org
Nucleic acid sensing through pattern recognition receptors is critical for immune recognition
of microbial infections. Microbial DNA is frequently methylated at the N6 position of adenines …
of microbial infections. Microbial DNA is frequently methylated at the N6 position of adenines …