Methylation data imputation performances under different representations and missingness patterns

PD Lena, C Sala, A Prodi, C Nardini - Bmc Bioinformatics, 2020 - Springer
Background High-throughput technologies enable the cost-effective collection and analysis
of DNA methylation data throughout the human genome. This naturally entails missing …

Calcium regulation of stem cells

HW Snoeck - EMBO reports, 2020 - embopress.org
Pluripotent and post‐natal, tissue‐specific stem cells share functional features such as the
capacity to differentiate into multiple lineages and to self‐renew, and are endowed with …

Macrophages, metabolites, and nucleosomes: chromatin at the intersection between aging and inflammation

MC Church, JL Workman, T Suganuma - International Journal of …, 2021 - mdpi.com
Inflammation is the body's means of defense against harmful stimuli, with the ultimate aim
being to restore homeostasis. Controlled acute inflammation transiently activates an immune …

5mC regulator-mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide precision medicine in bladder cancer

J Hu, B Othmane, A Yu, H Li, Z Cai, X Chen, W Ren… - BMC medicine, 2021 - Springer
Background Depicting the heterogeneity and functional characteristics of the tumor
microenvironment (TME) is necessary to achieve precision medicine for bladder cancer …

Integrating epigenetics and metabolomics to advance treatments for pulmonary arterial hypertension

ADCU Ranasinghe, MA Schwarz - Biochemical Pharmacology, 2022 - Elsevier
Pulmonary arterial hypertension (PAH) is a devastating vascular disease with multiple
etiologies. Emerging evidence supports a fundamental role for epigenetic machinery and …

[HTML][HTML] DNA methylation and the core pluripotency network

S Shanak, V Helms - Developmental biology, 2020 - Elsevier
From the onset of fertilization, the genome undergoes cell division and differentiation. All of
these developmental transitions and differentiation processes include cell-specific …

The Role of DNMT1 and C/EBPα in the Regulation of CYP11A1 Expression During Syncytialization of Human Placental Trophoblasts

YN Zhu, F Pan, XW Gan, Y Liu, WS Wang… - Endocrinology, 2024 - academic.oup.com
Progesterone synthesized in the placenta is essential for pregnancy maintenance.
CYP11A1 is a key enzyme in progesterone synthesis, and its expression increases greatly …

Thyroid Hormone Induces DNA Demethylation in Xenopus Tadpole Brain

S Raj, Y Kyono, CJ Sifuentes… - …, 2020 - academic.oup.com
Thyroid hormone (T3) plays pivotal roles in vertebrate development, acting via nuclear T3
receptors (TRs) that regulate gene transcription by promoting post-translational …

KANK1 regulates paclitaxel resistance in lung adenocarcinoma A549 cells

J Pu, J Shen, Z Zhong, M Yanling… - … Cells, Nanomedicine, and …, 2020 - Taylor & Francis
Abstract Paclitaxel (PTX), a tubulin-binding agent, is widely used and has shown good
efficacy in the initial period of treatment for non-small cell lung cancer (NSCLC). However …

Comprehensive Analysis and Functional Characteristics of Differential Expression of N6‐Methyladenosine Methylation Modification in the Whole Transcriptome of …

L Wan, J Liu, C Huang, Z Zhu, K Wang… - Mediators of …, 2022 - Wiley Online Library
N6‐methyladenosine (m6A) modification is the most prevalent chemical modification in
eukaryotic mRNA and is associated with the development of various immune diseases …