DNA methylation and regulation of gene expression: Guardian of our health

GA Dhar, S Saha, P Mitra, R Nag Chaudhuri - The Nucleus, 2021 - Springer
One of the most critical epigenetic signatures present in the genome of higher eukaryotes is
the methylation of DNA at the C-5 position of the cytosine ring. Based on the sites of DNA …

Recent advances in diabetic kidney diseases: from kidney injury to kidney fibrosis

PH Hung, YC Hsu, TH Chen, CL Lin - International Journal of Molecular …, 2021 - mdpi.com
Diabetic kidney disease (DKD) is the leading cause of chronic kidney disease and end-
stage renal disease. The natural history of DKD includes glomerular hyperfiltration …

DNA G-quadruplex structures mold the DNA methylome

SQ Mao, AT Ghanbarian, J Spiegel… - Nature structural & …, 2018 - nature.com
Control of DNA methylation level is critical for gene regulation, and the factors that govern
hypomethylation at CpG islands (CGIs) are still being uncovered. Here, we provide evidence …

Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species

J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
Methylation of cytosines is a prototypic epigenetic modification of the DNA. It has been
implicated in various regulatory mechanisms across the animal kingdom and particularly in …

Targeting HIF-2α in the tumor microenvironment: redefining the role of HIF-2α for solid cancer therapy

L Davis, M Recktenwald, E Hutt, S Fuller, M Briggs… - Cancers, 2022 - mdpi.com
Simple Summary Hypoxia is defined as the inadequate supply of oxygen in tissues. Regions
of acute and chronic hypoxia are a universal feature of the tumor microenvironment and a …

The trinity of cGAS, TLR9, and ALRs guardians of the cellular galaxy against host-derived self-DNA

V Kumar - Frontiers in Immunology, 2021 - frontiersin.org
The immune system has evolved to protect the host from the pathogens and allergens
surrounding their environment. The immune system develops in such a way to recognize …

Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

G van Mierlo, RAM Dirks, L De Clerck, AB Brinkman… - Cell stem cell, 2019 - cell.com
The pluripotent ground state is defined as a basal state free of epigenetic restrictions, which
influence lineage specification. While naive embryonic stem cells (ESCs) can be maintained …

Sequence determinants, function, and evolution of CpG islands

A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …

Enhancer-gene specificity in development and disease

T Pachano, E Haro, A Rada-Iglesias - Development, 2022 - journals.biologists.com
Enhancers control the establishment of spatiotemporal gene expression patterns throughout
development. Over the past decade, the development of new technologies has improved our …

Molecular processes connecting DNA methylation patterns with DNA methyltransferases and histone modifications in mammalian genomes

A Jeltsch, J Broche, P Bashtrykov - Genes, 2018 - mdpi.com
DNA methylation is an essential part of the epigenome chromatin modification network,
which also comprises several covalent histone protein post-translational modifications. All …