Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?

EJ Duncan, PD Gluckman… - Journal of Experimental …, 2014 - Wiley Online Library
Epigenetic mechanisms are proposed as an important way in which the genome responds
to the environment. Epigenetic marks, including DNA methylation and Histone modifications …

Does skeletal muscle have an 'epi'‐memory? The role of epigenetics in nutritional programming, metabolic disease, aging and exercise

AP Sharples, CE Stewart, RA Seaborne - Aging cell, 2016 - Wiley Online Library
Skeletal muscle mass, quality and adaptability are fundamental in promoting muscle
performance, maintaining metabolic function and supporting longevity and healthspan …

Identifying ChIP-seq enrichment using MACS

J Feng, T Liu, B Qin, Y Zhang, XS Liu - Nature protocols, 2012 - nature.com
Abstract Model-based analysis of ChIP-seq (MACS) is a computational algorithm that
identifies genome-wide locations of transcription/chromatin factor binding or histone …

Deep sequencing reveals increased DNA methylation in chronic rat epilepsy

K Kobow, A Kaspi, KN Harikrishnan, K Kiese… - Acta …, 2013 - Springer
Epilepsy is a frequent neurological disorder, although onset and progression of seizures
remain difficult to predict in affected patients, irrespective of their epileptogenic condition …

Genome‐wide DNA methylation changes with age in disease‐free human skeletal muscle

A Zykovich, A Hubbard, JM Flynn, M Tarnopolsky… - Aging cell, 2014 - Wiley Online Library
A decline in skeletal muscle mass and function with aging is well recognized, but remains
poorly characterized at the molecular level. Here, we report for the first time a genome‐wide …

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing

DR Masser, AS Berg, WM Freeman - Epigenetics & chromatin, 2013 - Springer
Background The growing interest in the role of epigenetic modifications in human health and
disease has led to the development of next-generation sequencing methods for whole …

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

KA Panfilio, IM Vargas Jentzsch, JB Benoit… - Genome biology, 2019 - Springer
Abstract Background The Hemiptera (aphids, cicadas, and true bugs) are a key insect order,
with high diversity for feeding ecology and excellent experimental tractability for molecular …

Can epigenetics translate environmental cues into phenotypes?

P Norouzitallab, K Baruah, D Vanrompay… - Science of the Total …, 2019 - Elsevier
Living organisms are constantly exposed to wide ranges of environmental cues. They react
to these cues by undergoing a battery of phenotypic responses, such as by altering their …

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

S Sati, S Ghosh, V Jain, V Scaria… - Nucleic acids …, 2012 - academic.oup.com
A major fraction of the transcriptome of higher organisms comprised an extensive repertoire
of long non-coding RNA (lncRNA) which express in a cell type and development stage …

[HTML][HTML] Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc

MR Gavery, SB Roberts - PeerJ, 2013 - peerj.com
Abstract Characterization of DNA methylation patterns in the Pacific oyster, Crassostrea
gigas, indicates that this epigenetic mechanism plays an important functional role in gene …