Epigenetic mechanisms that underpin metabolic and cardiovascular diseases

PD Gluckman, MA Hanson, T Buklijas… - Nature Reviews …, 2009 - nature.com
Cellular commitment to a specific lineage is controlled by differential silencing of genes,
which in turn depends on epigenetic processes such as DNA methylation and histone …

[HTML][HTML] DNA methylation: conducting the orchestra from exposure to phenotype?

FAD Leenen, CP Muller, JD Turner - Clinical epigenetics, 2016 - Springer
Abstract DNA methylation, through 5-methyl-and 5-hydroxymethylcytosine (5mC and 5hmC),
is considered to be one of the principal interfaces between the genome and our …

g: Profiler—a web server for functional interpretation of gene lists (2011 update)

J Reimand, T Arak, J Vilo - Nucleic acids research, 2011 - academic.oup.com
Functional interpretation of candidate gene lists is an essential task in modern biomedical
research. Here, we present the 2011 update of g: Profiler (http://biit. cs. ut. ee/gprofiler/), a …

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

JW Nicol, GA Helt, SG Blanchard Jr, A Raja… - …, 2009 - academic.oup.com
Experimental techniques that survey an entire genome demand flexible, highly interactive
visualization tools that can display new data alongside foundation datasets, such as …

[HTML][HTML] Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

RC Slieker, SD Bos, JJ Goeman, JVMG Bovée… - Epigenetics & …, 2013 - Springer
Background DNA methylation has been recognized as a key mechanism in cell
differentiation. Various studies have compared tissues to characterize epigenetically …

[HTML][HTML] Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

AL Brunner, DS Johnson, SW Kim, A Valouev… - Genome …, 2009 - genome.cshlp.org
To investigate the role of DNA methylation during human development, we developed
Methyl-seq, a method that assays DNA methylation at more than 90,000 regions throughout …

DNA methylation status predicts cell type‐specific enhancer activity

M Wiench, S John, S Baek, TA Johnson… - The EMBO …, 2011 - embopress.org
Cell‐selective glucocorticoid receptor (GR) binding to distal regulatory elements is
associated with cell type‐specific regions of locally accessible chromatin. These regions can …

Tissue‐specific dysregulation of DNA methylation in aging

RF Thompson, G Atzmon, C Gheorghe, HQ Liang… - Aging cell, 2010 - Wiley Online Library
The normal aging process is a complex phenomenon associated with physiological
alterations in the function of cells and organs over time. Although an attractive candidate for …

[PDF][PDF] Structure of the Dnmt1 reader module complexed with a unique two-mono-ubiquitin mark on histone H3 reveals the basis for DNA methylation maintenance

S Ishiyama, A Nishiyama, Y Saeki, K Moritsugu… - Molecular cell, 2017 - cell.com
The proper location and timing of Dnmt1 activation are essential for DNA methylation
maintenance. We demonstrate here that Dnmt1 utilizes two-mono-ubiquitylated histone H3 …