Plant DNA methylation: an epigenetic mark in development, environmental interactions, and evolution

F Lucibelli, MC Valoroso, S Aceto - International Journal of Molecular …, 2022 - mdpi.com
DNA methylation is an epigenetic modification of the genome involved in the regulation of
gene expression and modulation of chromatin structure. Plant genomes are widely …

Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

Oak genome reveals facets of long lifespan

C Plomion, JM Aury, J Amselem, T Leroy, F Murat… - Nature plants, 2018 - nature.com
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …

[HTML][HTML] The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

A Zemach, MY Kim, PH Hsieh, D Coleman-Derr… - Cell, 2013 - cell.com
Nucleosome remodelers of the DDM1/Lsh family are required for DNA methylation of
transposable elements, but the reason for this is unknown. How DDM1 interacts with other …

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

D Secco, C Wang, H Shou, MD Schultz, S Chiarenza… - elife, 2015 - elifesciences.org
Cytosine DNA methylation (mC) is a genome modification that can regulate the expression
of coding and non-coding genetic elements. However, little is known about the involvement …

Patterns of population epigenomic diversity

RJ Schmitz, MD Schultz, MA Urich, JR Nery… - Nature, 2013 - nature.com
Natural epigenetic variation provides a source for the generation of phenotypic diversity, but
to understand its contribution to such diversity, its interaction with genetic variation requires …

The Arabidopsis thaliana mobilome and its impact at the species level

L Quadrana, A Bortolini Silveira, GF Mayhew… - elife, 2016 - elifesciences.org
Transposable elements (TEs) are powerful motors of genome evolution yet a
comprehensive assessment of recent transposition activity at the species level is lacking for …

Epigenetics: a catalyst of plant immunity against pathogens

A Hannan Parker, SW Wilkinson, J Ton - New Phytologist, 2022 - Wiley Online Library
The plant immune system protects against pests and diseases. The recognition of stress‐
related molecular patterns triggers localised immune responses, which are often followed by …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …

LTR-retrotransposons in plants: Engines of evolution

L Galindo-González, C Mhiri, MK Deyholos… - Gene, 2017 - Elsevier
LTR retrotransposons are the most abundant group of transposable elements (TEs) in
plants. These elements can fall inside or close to genes, and therefore influence their …