Pioneer factors as master regulators of the epigenome and cell fate

A Balsalobre, J Drouin - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Pioneer factors are transcription factors with the unique ability to initiate opening of closed
chromatin. The stability of cell identity relies on robust mechanisms that maintain the …

Regulation of transposable elements by DNA modifications

Ö Deniz, JM Frost, MR Branco - Nature Reviews Genetics, 2019 - nature.com
Maintenance of genome stability requires control over the expression of transposable
elements (TEs), whose activity can have substantial deleterious effects on the host …

Interplay between chromatin marks in development and disease

SM Janssen, MC Lorincz - Nature Reviews Genetics, 2022 - nature.com
DNA methylation (DNAme) and histone post-translational modifications (PTMs) have
important roles in transcriptional regulation. Although many reports have characterized the …

Generation of human oogonia from induced pluripotent stem cells in vitro

C Yamashiro, K Sasaki, Y Yabuta, Y Kojima… - Science, 2018 - science.org
Human in vitro gametogenesis may transform reproductive medicine. Human pluripotent
stem cells (hPSCs) have been induced into primordial germ cell–like cells (hPGCLCs); …

Assessment of glyphosate induced epigenetic transgenerational inheritance of pathologies and sperm epimutations: generational toxicology

D Kubsad, EE Nilsson, SE King, I Sadler-Riggleman… - Scientific reports, 2019 - nature.com
Ancestral environmental exposures to a variety of factors and toxicants have been shown to
promote the epigenetic transgenerational inheritance of adult onset disease. One of the …

Epigenetic resetting of human pluripotency

G Guo, F von Meyenn, M Rostovskaya… - …, 2017 - journals.biologists.com
Much attention has focussed on the conversion of human pluripotent stem cells (PSCs) to a
more naïve developmental status. Here we provide a method for resetting via transient …

Comparative transcriptomics in human and mouse

A Breschi, TR Gingeras, R Guigó - Nature Reviews Genetics, 2017 - nature.com
Cross-species comparisons of genomes, transcriptomes and gene regulation are now
feasible at unprecedented resolution and throughput, enabling the comparison of human …

Epigenetic dynamics during capacitation of naïve human pluripotent stem cells

J Agostinho de Sousa, CW Wong, I Dunkel… - Science …, 2023 - science.org
Human pluripotent stem cells (hPSCs) are of fundamental relevance in regenerative
medicine. Naïve hPSCs hold promise to overcome some of the limitations of conventional …

Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)

SJ Clark, SA Smallwood, HJ Lee, F Krueger, W Reik… - Nature protocols, 2017 - nature.com
DNA methylation (DNAme) is an important epigenetic mark in diverse species. Our current
understanding of DNAme is based on measurements from bulk cell samples, which …

Cell-fate transition and determination analysis of mouse male germ cells throughout development

J Zhao, P Lu, C Wan, Y Huang, M Cui, X Yang… - Nature …, 2021 - nature.com
Mammalian male germ cell development is a stepwise cell-fate transition process; however,
the full-term developmental profile of male germ cells remains undefined. Here, by …