[HTML][HTML] DNA methylation and histone modification in low-grade gliomas: current understanding and potential clinical targets

A Ozair, V Bhat, RS Alisch, AA Khosla, RR Kotecha… - Cancers, 2023 - mdpi.com
Simple Summary Brain tumors comprise a large, varied group, with gliomas being the most
common malignant tumors arising in the brain. This state-of-the-art review discusses the role …

[HTML][HTML] Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation

P Oberacker, P Stepper, DM Bond, S Höhn… - PLoS …, 2019 - journals.plos.org
Current molecular biology laboratories rely heavily on the purification and manipulation of
nucleic acids. Yet, commonly used centrifuge-and column-based protocols require …

Alterations to DNMT3A in Hematologic Malignancies

K Venugopal, Y Feng, D Shabashvili, OA Guryanova - Cancer research, 2021 - AACR
In the last decade, large-scale genomic studies in patients with hematologic malignancies
identified recurrent somatic alterations in epigenetic modifier genes. Among these, the de …

Vitamin C enhances NF-κB-driven epigenomic reprogramming and boosts the immunogenic properties of dendritic cells

O Morante-Palacios, G Godoy-Tena… - Nucleic Acids …, 2022 - academic.oup.com
Dendritic cells (DCs), the most potent antigen-presenting cells, are necessary for effective
activation of naïve T cells. DCs' immunological properties are modulated in response to …

[HTML][HTML] The epigenetic pioneer EGR2 initiates DNA demethylation in differentiating monocytes at both stable and transient binding sites

K Mendes, S Schmidhofer, J Minderjahn… - Nature …, 2021 - nature.com
The differentiation of human blood monocytes (MO), the post-mitotic precursors of
macrophages (MAC) and dendritic cells (moDC), is accompanied by the active turnover of …

Deciphering the genetic code of DNA methylation

M Wang, V Ngo, W Wang - Briefings in bioinformatics, 2021 - academic.oup.com
DNA methylation plays crucial roles in many biological processes and abnormal DNA
methylation patterns are often observed in diseases. Recent studies have shed light on cis …

[HTML][HTML] Environmental Adaptation of Genetically Uniform Organisms with the Help of Epigenetic Mechanisms—An Insightful Perspective on Ecoepigenetics

G Vogt - Epigenomes, 2022 - mdpi.com
Organisms adapt to different environments by selection of the most suitable phenotypes from
the standing genetic variation or by phenotypic plasticity, the ability of single genotypes to …

Interplay between DNA replication stress, chromatin dynamics and DNA-damage response for the maintenance of genome stability

M Mognato, S Burdak-Rothkamm… - … Research/Reviews in …, 2021 - Elsevier
DNA replication stress is a major source of DNA damage, including double-stranded breaks
that promote DNA damage response (DDR) signaling. Inefficient repair of such lesions can …

[HTML][HTML] Hypoxia and chromatin: a focus on transcriptional repression mechanisms

M Batie, L Del Peso, S Rocha - Biomedicines, 2018 - mdpi.com
Hypoxia or reduced oxygen availability has been studied extensively for its ability to activate
specific genes. Hypoxia-induced gene expression is mediated by the HIF transcription …

Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function

M Ravichandran, D Rafalski, CI Davies… - Science …, 2022 - science.org
TET (ten-eleven translocation) enzymes catalyze the oxidation of 5-methylcytosine bases in
DNA, thus driving active and passive DNA demethylation. Here, we report that the catalytic …