Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools
L Zhang, K Udaka, H Mamitsuka… - Briefings in …, 2012 - academic.oup.com
Binding of short antigenic peptides to major histocompatibility complex (MHC) molecules is
a core step in adaptive immune response. Precise identification of MHC-restricted peptides …
a core step in adaptive immune response. Precise identification of MHC-restricted peptides …
Drug side effect prediction through linear neighborhoods and multiple data source integration
W Zhang, Y Chen, S Tu, F Liu… - 2016 IEEE international …, 2016 - ieeexplore.ieee.org
Predicting drug side effects is a critical task in the drug discovery, which attracts great
attentions in both academy and industry. Although lots of machine learning methods have …
attentions in both academy and industry. Although lots of machine learning methods have …
Mutated and Bacteriophage T4 Nanoparticle Arrayed F1-V Immunogens from Yersinia pestis as Next Generation Plague Vaccines
Pneumonic plague is a highly virulent infectious disease with 100% mortality rate, and its
causative organism Yersinia pestis poses a serious threat for deliberate use as a bioterror …
causative organism Yersinia pestis poses a serious threat for deliberate use as a bioterror …
DeepMHCII: a novel binding core-aware deep interaction model for accurate MHC-II peptide binding affinity prediction
Motivation Computationally predicting major histocompatibility complex (MHC)-peptide
binding affinity is an important problem in immunological bioinformatics. Recent cutting …
binding affinity is an important problem in immunological bioinformatics. Recent cutting …
Designing of Complex Multi-epitope Peptide Vaccine Based on Omps of Klebsiella pneumoniae: An In Silico Approach
Klebsiella pneumoniae is a hospital-acquired pathogen that leads to various infections.
There is a great interest in developing an efficient Klebsiella vaccine and epitope-based …
There is a great interest in developing an efficient Klebsiella vaccine and epitope-based …
The utility and limitations of current Web-available algorithms to predict peptides recognized by CD4 T cells in response to pathogen infection
FA Chaves, AH Lee, JL Nayak… - The Journal of …, 2012 - journals.aai.org
The ability to track CD4 T cells elicited in response to pathogen infection or vaccination is
critical because of the role these cells play in protective immunity. Coupled with advances in …
critical because of the role these cells play in protective immunity. Coupled with advances in …
Immunodominant T cell determinants of aquaporin-4, the autoantigen associated with neuromyelitis optica
PA Nelson, M Khodadoust, T Prodhomme, C Spencer… - PLoS …, 2010 - journals.plos.org
Autoantibodies that target the water channel aquaporin-4 (AQP4) in neuromyelitis optica
(NMO) are IgG1, a T cell-dependent Ig subclass. However, a role for AQP4-specific T cells in …
(NMO) are IgG1, a T cell-dependent Ig subclass. However, a role for AQP4-specific T cells in …
Structure-aware deep model for MHC-II peptide binding affinity prediction
The prediction of major histocompatibility complex (MHC)-peptide binding affinity is an
important branch in immune bioinformatics, especially helpful in accelerating the design of …
important branch in immune bioinformatics, especially helpful in accelerating the design of …
NIEluter: Predicting peptides eluted from HLA class I molecules
The immune system has evolved to make a diverse repertoire of peptides processed from
self and foreign proteomes, which are displayed in antigen-binding grooves of major …
self and foreign proteomes, which are displayed in antigen-binding grooves of major …
MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions
Background Computational prediction of major histocompatibility complex class II (MHC-II)
binding peptides can assist researchers in understanding the mechanism of immune …
binding peptides can assist researchers in understanding the mechanism of immune …