Statistical and integrative system-level analysis of DNA methylation data

AE Teschendorff, CL Relton - Nature Reviews Genetics, 2018 - nature.com
Epigenetics plays a key role in cellular development and function. Alterations to the
epigenome are thought to capture and mediate the effects of genetic and environmental risk …

DNA methylation patterns and epigenetic memory

A Bird - Genes & development, 2002 - genesdev.cshlp.org
The character of a cell is defined by its constituent proteins, which are the result of specific
patterns of gene expression. Crucial determinants of gene expression patterns are DNA …

Conserved role of intragenic DNA methylation in regulating alternative promoters

AK Maunakea, RP Nagarajan, M Bilenky, TJ Ballinger… - Nature, 2010 - nature.com
Although it is known that the methylation of DNA in 5′ promoters suppresses gene
expression, the role of DNA methylation in gene bodies is unclear,,,,. In mammals, tissue …

In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism

EJ Radford, M Ito, H Shi, JA Corish, K Yamazawa… - Science, 2014 - science.org
Introduction The rapid global rise in metabolic disease suggests that nongenetic
environmental factors contribute to disease risk. Early life represents a window of phenotypic …

Widespread plasticity in CTCF occupancy linked to DNA methylation

H Wang, MT Maurano, H Qu, KE Varley, J Gertz… - Genome …, 2012 - genome.cshlp.org
CTCF is a ubiquitously expressed regulator of fundamental genomic processes including
transcription, intra-and interchromosomal interactions, and chromatin structure. Because of …

Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

R Jaenisch, A Bird - Nature genetics, 2003 - nature.com
Cells of a multicellular organism are genetically homogeneous but structurally and
functionally heterogeneous owing to the differential expression of genes. Many of these …

Epigenetic reprogramming in mammalian development

W Reik, W Dean, J Walter - Science, 2001 - science.org
DNA methylation is a major epigenetic modification of the genome that regulates crucial
aspects of its function. Genomic methylation patterns in somatic differentiated cells are …

Eukaryotic cytosine methyltransferases

MG Goll, TH Bestor - Annu. Rev. Biochem., 2005 - annualreviews.org
▪ Abstract Large-genome eukaryotes use heritable cytosine methylation to silence
promoters, especially those associated with transposons and imprinted genes. Cytosine …

The DNA methyltransferases of mammals

TH Bestor - Human molecular genetics, 2000 - academic.oup.com
The biological significance of 5-methylcytosine was in doubt for many years, but is no
longer. Through targeted mutagenesis in mice it has been learnt that every protein shown by …

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

M Weber, I Hellmann, MB Stadler, L Ramos, S Pääbo… - Nature …, 2007 - nature.com
To gain insight into the function of DNA methylation at cis-regulatory regions and its impact
on gene expression, we measured methylation, RNA polymerase occupancy and histone …