[PDF][PDF] DNA methylation clocks in aging: categories, causes, and consequences

AE Field, NA Robertson, T Wang, A Havas, T Ideker… - Molecular cell, 2018 - cell.com
Age-associated changes to the mammalian DNA methylome are well documented and
thought to promote diseases of aging, such as cancer. Recent studies have identified …

[HTML][HTML] Statistics or biology: the zero-inflation controversy about scRNA-seq data

R Jiang, T Sun, D Song, JJ Li - Genome biology, 2022 - Springer
Researchers view vast zeros in single-cell RNA-seq data differently: some regard zeros as
biological signals representing no or low gene expression, while others regard zeros as …

[HTML][HTML] Human body epigenome maps reveal noncanonical DNA methylation variation

MD Schultz, Y He, JW Whitaker, M Hariharan… - Nature, 2015 - nature.com
Understanding the diversity of human tissues is fundamental to disease and requires linking
genetic information, which is identical in most of an individual's cells, with epigenetic …

DNA methylation: roles in mammalian development

ZD Smith, A Meissner - Nature Reviews Genetics, 2013 - nature.com
DNA methylation is among the best studied epigenetic modifications and is essential to
mammalian development. Although the methylation status of most CpG dinucleotides in the …

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

T Nagano, Y Lubling, TJ Stevens, S Schoenfelder… - Nature, 2013 - nature.com
Large-scale chromosome structure and spatial nuclear arrangement have been linked to
control of gene expression and DNA replication and repair. Genomic techniques based on …

[HTML][HTML] Gene body methylation in cancer: molecular mechanisms and clinical applications

Q Wang, F Xiong, G Wu, W Liu, J Chen, B Wang… - Clinical …, 2022 - Springer
DNA methylation is an important epigenetic mechanism that regulates gene expression. To
date, most DNA methylation studies have focussed on CpG islands in the gene promoter …

Dynamic DNA methylation across diverse human cell lines and tissues

KE Varley, J Gertz, KM Bowling, SL Parker… - Genome …, 2013 - genome.cshlp.org
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types …

[HTML][HTML] Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

AK Maunakea, I Chepelev, K Cui, K Zhao - Cell research, 2013 - nature.com
Although the function of DNA methylation in gene promoter regions is well established in
transcriptional repression, the function of the evolutionarily conserved widespread …

Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia

M Kulis, S Heath, M Bibikova, AC Queirós, A Navarro… - Nature …, 2012 - nature.com
We have extensively characterized the DNA methylomes of 139 patients with chronic
lymphocytic leukemia (CLL) with mutated or unmutated IGHV and of several mature B-cell …

[HTML][HTML] Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood

MN Davies, M Volta, R Pidsley, K Lunnon, A Dixit… - Genome biology, 2012 - Springer
Background Dynamic changes to the epigenome play a critical role in establishing and
maintaining cellular phenotype during differentiation, but little is known about the normal …