DNA methylation aging clocks: challenges and recommendations

CG Bell, R Lowe, PD Adams, AA Baccarelli, S Beck… - Genome biology, 2019 - Springer
Epigenetic clocks comprise a set of CpG sites whose DNA methylation levels measure
subject age. These clocks are acknowledged as a highly accurate molecular correlate of …

Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution

E Jablonka, G Raz - The Quarterly review of biology, 2009 - journals.uchicago.edu
This review describes new developments in the study of transgenerational epigenetic
inheritance, a component of epigenetics. We start by examining the basic concepts of the …

Patterns of population epigenomic diversity

RJ Schmitz, MD Schultz, MA Urich, JR Nery… - Nature, 2013 - nature.com
Natural epigenetic variation provides a source for the generation of phenotypic diversity, but
to understand its contribution to such diversity, its interaction with genetic variation requires …

Structure and function of mammalian DNA methyltransferases

RZ Jurkowska, TP Jurkowski, A Jeltsch - Chembiochem, 2011 - Wiley Online Library
DNA methylation plays an important role in epigenetic signalling, having an impact on gene
regulation, chromatin structure, development and disease. Here, we review the structures …

Inherited epigenetic variation—revisiting soft inheritance

EJ Richards - Nature Reviews Genetics, 2006 - nature.com
Phenotypic variation is traditionally parsed into components that are directed by genetic and
environmental variation. The line between these two components is blurred by inherited …

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases

J Arand, D Spieler, T Karius, MR Branco… - PLoS …, 2012 - journals.plos.org
The enzymatic control of the setting and maintenance of symmetric and non-symmetric DNA
methylation patterns in a particular genome context is not well understood. Here, we …

Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells

F Von Meyenn, M Iurlaro, E Habibi, NQ Liu… - Molecular cell, 2016 - cell.com
Global demethylation is part of a conserved program of epigenetic reprogramming to naive
pluripotency. The transition from primed hypermethylated embryonic stem cells (ESCs) to …

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

PA Ginno, D Gaidatzis, A Feldmann, L Hoerner… - Nature …, 2020 - nature.com
DNA methylation is considered a stable epigenetic mark, yet methylation patterns can vary
during differentiation and in diseases such as cancer. Local levels of DNA methylation result …

A twin approach to unraveling epigenetics

JT Bell, TD Spector - Trends in Genetics, 2011 - cell.com
The regulation of gene expression plays a pivotal role in complex phenotypes, and
epigenetic mechanisms such as DNA methylation are essential to this process. The …

DNA methylation in human epigenomes depends on local topology of CpG sites

C Lövkvist, IB Dodd, K Sneppen… - Nucleic acids …, 2016 - academic.oup.com
In vertebrates, methylation of cytosine at CpG sequences is implicated in stable and
heritable patterns of gene expression. The classical model for inheritance, in which …