DNA demethylation pathways: additional players and regulators

M Bochtler, A Kolano, GL Xu - Bioessays, 2017 - Wiley Online Library
DNA demethylation can occur passively by “dilution” of methylation marks by DNA
replication, or actively and independently of DNA replication. Direct conversion of 5 …

Non‐canonical bases in the genome: the regulatory information layer in DNA

T Carell, MQ Kurz, M Müller, M Rossa… - Angewandte Chemie …, 2018 - Wiley Online Library
Multicellular organisms developed the concept of specialized cells that perform specific
functions. Examples are neurons and fibroblast to name just two out of more than 200 …

Detection, structure and function of modified DNA bases

A Hofer, ZJ Liu, S Balasubramanian - Journal of the American …, 2019 - ACS Publications
While some DNA base modifications such as 5-methylcytosine have been known and
studied for decades, recent discoveries of a number of other modified bases have stimulated …

APOBEC3A efficiently deaminates methylated, but not TET-oxidized, cytosine bases in DNA

EK Schutsky, CS Nabel, AKF Davis… - Nucleic acids …, 2017 - academic.oup.com
AID/APOBEC family enzymes are best known for deaminating cytosine bases to uracil in
single-stranded DNA, with characteristic sequence preferences that can produce mutational …

DNA methylation dynamics of germinal center B cells are mediated by AID

PM Dominguez, M Teater, N Chambwe, M Kormaksson… - Cell reports, 2015 - cell.com
Changes in DNA methylation are required for the formation of germinal centers (GCs), but
the mechanisms of such changes are poorly understood. Activation-induced cytidine …

Sequencing abasic sites in DNA at single-nucleotide resolution

ZJ Liu, S Martínez Cuesta, P van Delft… - Nature …, 2019 - nature.com
In DNA, the loss of a nucleobase by hydrolysis generates an abasic site. Formed as a result
of DNA damage, as well as a key intermediate during the base excision repair pathway …

Active DNA demethylation by DNA repair: Facts and uncertainties

D Schuermann, AR Weber, P Schär - DNA repair, 2016 - Elsevier
Pathways that control and modulate DNA methylation patterning in mammalian cells were
poorly understood for a long time, although their importance in establishing and maintaining …

AICDA drives epigenetic heterogeneity and accelerates germinal center-derived lymphomagenesis

M Teater, PM Dominguez, D Redmond, Z Chen… - Nature …, 2018 - nature.com
Epigenetic heterogeneity is emerging as a feature of tumors. In diffuse large B-cell
lymphoma (DLBCL), increased cytosine methylation heterogeneity is associated with poor …

Enigmatic 5-hydroxymethyluracil: Oxidatively modified base, epigenetic mark or both?

R Olinski, M Starczak, D Gackowski - Mutation Research/Reviews in …, 2016 - Elsevier
The aim of this review is to describe the reactions which lead to generation of 5-
hydroxymethyluracil, as well as the repair processes involved in its removal from DNA, and …

Active turnover of genomic methylcytosine in pluripotent cells

F Spada, S Schiffers, A Kirchner, Y Zhang… - Nature Chemical …, 2020 - nature.com
Epigenetic plasticity underpins cell potency, but the extent to which active turnover of DNA
methylation contributes to such plasticity is not known, and the underlying pathways are …