Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities

M Zitnik, F Nguyen, B Wang, J Leskovec… - Information …, 2019 - Elsevier
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …

Epigenetics of modified DNA bases: 5-methylcytosine and beyond

S Kumar, V Chinnusamy, T Mohapatra - Frontiers in genetics, 2018 - frontiersin.org
Modification of DNA bases plays vital roles in the epigenetic control of gene expression in
both animals and plants. Though much attention is given to the conventional epigenetic …

Maternal inheritance of glucose intolerance via oocyte TET3 insufficiency

B Chen, YR Du, H Zhu, ML Sun, C Wang, Y Cheng… - Nature, 2022 - nature.com
Diabetes mellitus is prevalent among women of reproductive age, and many women are left
undiagnosed or untreated. Gestational diabetes has profound and enduring effects on the …

N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis

RR Edupuganti, S Geiger, RGH Lindeboom… - Nature structural & …, 2017 - nature.com
RNA modifications are integral to the regulation of RNA metabolism. One abundant mRNA
modification is N 6-methyladenosine (m6A), which affects various aspects of RNA …

Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond

A Breiling, F Lyko - Epigenetics & chromatin, 2015 - Springer
The chemical modification of DNA bases plays a key role in epigenetic gene regulation.
While much attention has been focused on the classical epigenetic mark, 5-methylcytosine …

How the epigenome integrates information and reshapes the synapse

RR Campbell, MA Wood - Nature Reviews Neuroscience, 2019 - nature.com
In the past few decades, the field of neuroepigenetics has investigated how the brain
encodes information to form long-lasting memories that lead to stable changes in behaviour …

DNA methylation readers and cancer: mechanistic and therapeutic applications

N Mahmood, SA Rabbani - Frontiers in oncology, 2019 - frontiersin.org
DNA methylation is a major epigenetic process that regulates chromatin structure which
causes transcriptional activation or repression of genes in a context-dependent manner. In …

The physics of epigenetics

R Cortini, M Barbi, BR Caré, C Lavelle, A Lesne… - Reviews of Modern …, 2016 - APS
In higher organisms, all cells share the same genome, but every cell expresses only a
limited and specific set of genes that defines the cell type. During cell division, not only the …

BDNF DNA methylation changes as a biomarker of psychiatric disorders: literature review and open access database analysis

GY Zheleznyakova, H Cao, HB Schiöth - Behavioral and brain functions, 2016 - Springer
Brain-derived neurotrophic factor (BDNF) plays an important role in nervous system
development and function and it is well established that BDNF is involved in the …

Translational perspective on epigenetics in cardiovascular disease

P van der Harst, LJ de Windt, JC Chambers - Journal of the American …, 2017 - jacc.org
A plethora of environmental and behavioral factors interact, resulting in changes in gene
expression and providing a basis for the development and progression of cardiovascular …