[HTML][HTML] CpG islands–'a rough guide'

RS Illingworth, AP Bird - FEBS letters, 2009 - Elsevier
Mammalian genomes are punctuated by DNA sequences containing an atypically high
frequency of CpG sites termed CpG islands (CGIs). CGIs generally lack DNA methylation …

Trefoil factors: initiators of mucosal healing

D Taupin, DK Podolsky - Nature reviews Molecular cell biology, 2003 - nature.com
Maintaining the integrity of the gastrointestinal tract, despite the continual presence of
microbial flora and injurious agents, is essential. Epithelial continuity depends on a family of …

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

H Kobayashi, T Sakurai, M Imai, N Takahashi… - PLoS …, 2012 - journals.plos.org
Genome-wide dynamic changes in DNA methylation are indispensable for germline
development and genomic imprinting in mammals. Here, we report single-base resolution …

DNA methylation profiling of human chromosomes 6, 20 and 22

F Eckhardt, J Lewin, R Cortese, VK Rakyan, J Attwood… - Nature …, 2006 - nature.com
DNA methylation is the most stable type of epigenetic modification modulating the
transcriptional plasticity of mammalian genomes. Using bisulfite DNA sequencing, we report …

Chromatin in pluripotent embryonic stem cells and differentiation

E Meshorer, T Misteli - Nature reviews Molecular cell biology, 2006 - nature.com
Embryonic stem (ES) cells are unique in that they are pluripotent and have the ability to self-
renew. The molecular mechanisms that underlie these two fundamental properties are …

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

R Illingworth, A Kerr, D DeSousa, H Jørgensen… - PLoS …, 2008 - journals.plos.org
CpG islands (CGIs) are dense clusters of CpG sequences that punctuate the CpG-deficient
human genome and associate with many gene promoters. As CGIs also differ from bulk …

Age-specific epigenetic drift in late-onset Alzheimer's disease

SC Wang, B Oelze, A Schumacher - PloS one, 2008 - journals.plos.org
Despite an enormous research effort, most cases of late-onset Alzheimer's disease (LOAD)
still remain unexplained and the current biomedical science is still a long way from the …

Epigenetic control of mouse Oct-4 gene expression in embryonic stem cells and trophoblast stem cells

N Hattori, K Nishino, Y Ko, N Hattori, J Ohgane… - Journal of Biological …, 2004 - ASBMB
The first cell differentiation event in mammalian embryogenesis segregates inner cell mass
lineage from the trophectoderm at the blastocyst stage. Oct-4, a member of the POU family of …

Epigenomics: beyond CpG islands

MJ Fazzari, JM Greally - Nature Reviews Genetics, 2004 - nature.com
Epigenomic studies aim to define the location and nature of the genomic sequences that are
epigenetically modified. Much progress has been made towards whole-genome epigenetic …

Comparative isoschizomer profiling of cytosine methylation: the HELP assay

B Khulan, RF Thompson, K Ye, MJ Fazzari… - Genome …, 2006 - genome.cshlp.org
The distribution of cytosine methylation in 6.2 Mb of the mouse genome was tested using
cohybridization of genomic representations from a methylation-sensitive restriction enzyme …